Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1d11r
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    29   0.99 
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   2.3  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    27   3.0  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   4.0  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   7.0  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.0  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    26   7.0  

>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 593 PTTTTFQLLPVSMENXTILHTVALSLDLPVAVSPVKYLMFTLLL 462
           P+  T  +L       +IL T+  SL   + VSP  Y +FT LL
Sbjct: 89  PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 81  FGKSNANDIYPVVLTSISSFTEWILQN 1
           FG S AN + PV L S  SFT +++++
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 698 RSLAVQLQTAASTATAKVRTETIVPIESN 784
           R L +  +  A +A+ K+ TE I+P ESN
Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +1

Query: 190 SHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNST 369
           S+D I  L+     F   H+E   +    +Y   L      E+  +N  GYYD   D S 
Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDESY 627

Query: 370 L 372
           L
Sbjct: 628 L 628


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 99  AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 206
           +H+  +  H S+Y R+R   PG N      QS   H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -3

Query: 617 NSALVLFSPTTTT-FQLLPVSMENXTI--LHTVALSLDLPVAVSPVKYLMFTLLLTIPNS 447
           N  L+ F  T T    LLP++     I  ++TV LSL +    S V+ L+F +L  +   
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349

Query: 446 LRRITTRM 423
           +  +T ++
Sbjct: 350 VNELTLKL 357


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 583 LPFNCYLFPWRIXRSCIPSHYRWIFP 506
           LP + + F W    +C P H  WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 147 DYDNTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSISSFTEWILQN 1
           D  + +L       + +   +SF K    D YP  +  +  FT+ ++QN
Sbjct: 102 DLTDVELSDKVIKASYIEDTISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,422,231
Number of Sequences: 5004
Number of extensions: 75765
Number of successful extensions: 236
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)