Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1d09r
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0464 - 17463066-17465136,17470821-17471650                       29   2.8  
01_01_0176 + 1507592-1507678,1507803-1507931,1508076-1508252,150...    27   6.5  
01_05_0551 + 23169751-23170491                                         27   8.7  

>08_02_0464 - 17463066-17465136,17470821-17471650
          Length = 966

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 198  FXGSIXNTSGNVDVHDELHKRRGTGGNSRSNDNR 299
            + G + N  GNVD  D  H     GG ++  DN+
Sbjct: 922  YFGEVMN-DGNVDEEDSAHLTDNNGGKNQDEDNK 954


>01_01_0176 +
           1507592-1507678,1507803-1507931,1508076-1508252,
           1508630-1508770,1509045-1509233,1509311-1509382,
           1509483-1509537,1509987-1510015,1510182-1510396,
           1510987-1511151,1511262-1511646
          Length = 547

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 237 VHDELHKRRGTGGNSRSNDNRSGLHGSXHYTTXSDRDV 350
           +HD+ H+RR     S ++D R   H   H ++ S +DV
Sbjct: 455 LHDDEHRRRRRRLRSEAHDERGAKH-PGHNSSSSSKDV 491


>01_05_0551 + 23169751-23170491
          Length = 246

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 249 LHKRRGTGGNSRSNDNRSGLHGSXHYTTXSDRD 347
           LH   G GG+ R+ D+  G +G     T SD D
Sbjct: 58  LHGGGGGGGDHRTTDDDDGSNGRDQAATLSDVD 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,760,927
Number of Sequences: 37544
Number of extensions: 83344
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)