Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1d09r
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical
           protein C26D10.1 protein.
          Length = 569

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 204 GSIXNTSGNVDVHDELHK 257
           G++ N++GNVDVH  LHK
Sbjct: 269 GNLRNSNGNVDVHPLLHK 286


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
 Frame = +3

Query: 144  DNGALFSLFGDNNGVGLDFXGSIX--NTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGS 317
            D GA  S    +N  GL   G+    N     DV   LH     G  S  ND  +GL+  
Sbjct: 878  DQGAKISTSSTDNQGGLACYGTTQAANWINLPDVRSALHVSSAAGAWSACNDTINGLYVQ 937

Query: 318  XHYTTXS 338
             H  T S
Sbjct: 938  QHNDTTS 944


>Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical
           protein F48F7.4 protein.
          Length = 925

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +3

Query: 147 NGALFSLFGDNNGVGLDFXGSIXNTSGNVDVHDELHKRRGTGGNSR----SNDNRSGLH 311
           N +  +L   +NG   +  GS+ N   N +  +   K RG  GN++     N+  SG H
Sbjct: 535 NSSTSALTPRSNGQKKETSGSVRNEGSNNNSQNRNTKYRGAVGNNQHMYNGNEGHSGAH 593


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,686,838
Number of Sequences: 27780
Number of extensions: 67925
Number of successful extensions: 248
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)