Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1d02r
(574 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 103 2e-23
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 33 0.039
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 29 0.48
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 27 1.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 3.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 3.4
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 3.4
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 26 3.4
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 4.5
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 6.0
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 7.9
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 7.9
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 25 7.9
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 7.9
SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.9
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 103 bits (246), Expect = 2e-23
Identities = 53/119 (44%), Positives = 77/119 (64%), Gaps = 3/119 (2%)
Frame = -1
Query: 571 EAARFAIEYCNAGKGPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEK 392
+A++FA +Y PL+ME TYRY GHSMSDPGT+YR+R+EVQ+VR RDPI K+
Sbjct: 281 QASKFAKKYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGLKKH 340
Query: 391 ILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEP-EVGIEE-LSADIYYKNLEP-FVRG 224
I+ + ++LK+I+ ++R VDE + ++ P IEE L +D+Y EP + RG
Sbjct: 341 IMEWGVANANELKNIEKRIRGMVDEEVRIAEESPFPDPIEESLFSDVYVAGTEPAYARG 399
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 32.7 bits (71), Expect = 0.039
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 436 PAPRLSSDTTCRGPTSNDQSNGTSPSPSPKDLSLRCSTRWRTWP 567
P PRL+++ T +N S SP+P +S + S + TWP
Sbjct: 220 PFPRLNNNNTNNNNDNNAIEKRDSASPTPSSVSSQISIDFSTWP 263
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 29.1 bits (62), Expect = 0.48
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 301 KTEPEVGIEELSADIYYKNLEPFVRGIHPAAPLKHLEVQPRN 176
K EP+VGI+E A Y+ L + +H + + H +++P N
Sbjct: 102 KIEPDVGIDEDVAQFYFAQLMEGISFMH-SKGVAHRDLKPEN 142
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 31 AVTKINNFYQRYCHINATVKKNN 99
A+ KINN+ R+ H+N+ KK+N
Sbjct: 126 AIVKINNYNSRFSHVNS--KKSN 146
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 442 PRLSSDTTCRGPTSNDQSNGTSPSPSPKDLSLRCST 549
P +S T+ P ++ S GTS SP P S C+T
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLP-STSTSCTT 341
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 22.6 bits (46), Expect(2) = 3.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 188 PTSQPLKPQYRLYLHHTQ 135
P +QPLKPQ +H+++
Sbjct: 251 PAAQPLKPQKTGQIHNSK 268
Score = 21.8 bits (44), Expect(2) = 3.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 251 QELGTLRPWHPPGCPAQTP*GPTSQPLKPQ 162
Q+ G + P P G P GP + ++PQ
Sbjct: 215 QQTGVVMPPQPTGYLQAQPTGPFASFVQPQ 244
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 424 SASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSP 522
SA PP P S+ +T R P S S P+P
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Frame = +1
Query: 433 PPAPRLSSDTTCRGPTSNDQSNGTSPSPSPKDL-----SLRCSTRWRTWPPP 573
PP P S + P N SN + P P P S+ + R+ PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 26.2 bits (55), Expect = 3.4
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -1
Query: 448 DEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEEL 269
+E + +R+ P+ S + +L+ +T Q D D + +VD+ QS T+P +
Sbjct: 838 EERRPIRRLWWPLRSIRRSLLSQ--LTGHQ-GDYDENIHNDVDKDMNQSSTQPRDPDADH 894
Query: 268 SADIYY 251
+ +Y+
Sbjct: 895 PSSLYH 900
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 7 KSKVTYCVAVTKINNFYQRY 66
+ K CV +TK+ NFY+ Y
Sbjct: 71 QKKFADCVLLTKVGNFYEMY 90
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 527 SFGDGDGDVPLLWSFDVGPRHVVSDERRGAGGEAD 423
+ GDG DV ++ D+G +V +E R A AD
Sbjct: 1009 AIGDGANDVAMIQKADIGV-GIVGEEGRAAAMSAD 1042
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -1
Query: 388 LNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEELS 266
LN++ + + +AK ++ V+E TKQ + + + + ELS
Sbjct: 178 LNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELS 218
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +1
Query: 427 ASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSP 522
+S P P SS R +N +P+P+P
Sbjct: 593 SSRPTPNASSPLDVRSKQKPSSANSNAPTPAP 624
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +1
Query: 469 RGPTSNDQSNGTSPSPSPKDLSLRCSTRWRTWP 567
+G + ++N T+P+P+ + R + WR P
Sbjct: 618 KGDANTRRANATNPTPTCTNCQTRTTPLWRRSP 650
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 25.0 bits (52), Expect = 7.9
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +2
Query: 464 RAGVRHRMTRVTVRLHLH 517
R G++H ++ V+++LHLH
Sbjct: 614 RWGIKHCLSNVSLQLHLH 631
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 7.9
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = -1
Query: 445 EVQEVRQTRDPITSFKEKILNHELVTPDQLK-----DIDAKVRKEVDEATKQSK-TEPEV 284
+VQE + P+ KE L EL PD LK DI+A+++ SK T P +
Sbjct: 55 DVQEPAEETIPLEQDKENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPI 114
>SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 235 RVPSSCSIYRRTTLQYRLLV 294
R PS IYR T +QY LL+
Sbjct: 82 RCPSRKPIYRTTRIQYLLLI 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,570
Number of Sequences: 5004
Number of extensions: 49509
Number of successful extensions: 173
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -