Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1d02f
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...   103   3e-23
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    33   0.043
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    29   0.53 
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    27   1.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    23   3.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   3.8  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   3.8  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   3.8  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   6.6  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   8.7  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   8.7  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   8.7  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   8.7  
SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.7  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  103 bits (246), Expect = 3e-23
 Identities = 53/119 (44%), Positives = 77/119 (64%), Gaps = 3/119 (2%)
 Frame = +1

Query: 4   EAARFAIEYCNAGKGPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEK 183
           +A++FA +Y      PL+ME  TYRY GHSMSDPGT+YR+R+EVQ+VR  RDPI   K+ 
Sbjct: 281 QASKFAKKYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGLKKH 340

Query: 184 ILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEP-EVGIEE-LSADIYYKNLEP-FVRG 351
           I+   +   ++LK+I+ ++R  VDE  + ++  P    IEE L +D+Y    EP + RG
Sbjct: 341 IMEWGVANANELKNIEKRIRGMVDEEVRIAEESPFPDPIEESLFSDVYVAGTEPAYARG 399


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 139 PAPRLSSDTTCRGPTSNDQSNGTSPSPSPKDLSLRCSTRWRTWP 8
           P PRL+++ T     +N      S SP+P  +S + S  + TWP
Sbjct: 220 PFPRLNNNNTNNNNDNNAIEKRDSASPTPSSVSSQISIDFSTWP 263


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 274 KTEPEVGIEELSADIYYKNLEPFVRGIHPAAPLKHLEVQPRN 399
           K EP+VGI+E  A  Y+  L   +  +H +  + H +++P N
Sbjct: 102 KIEPDVGIDEDVAQFYFAQLMEGISFMH-SKGVAHRDLKPEN 142


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 544 AVTKINNFYQRYCHINATVKKNN 476
           A+ KINN+  R+ H+N+  KK+N
Sbjct: 126 AIVKINNYNSRFSHVNS--KKSN 146


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 133 PRLSSDTTCRGPTSNDQSNGTSPSPSPKDLSLRCST 26
           P  +S T+   P ++  S GTS SP P   S  C+T
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLP-STSTSCTT 341


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 22.6 bits (46), Expect(2) = 3.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 387 PTSQPLKPQYRLYLHHTQ 440
           P +QPLKPQ    +H+++
Sbjct: 251 PAAQPLKPQKTGQIHNSK 268



 Score = 21.8 bits (44), Expect(2) = 3.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 324 QELGTLRPWHPPGCPAQTP*GPTSQPLKPQ 413
           Q+ G + P  P G     P GP +  ++PQ
Sbjct: 215 QQTGVVMPPQPTGYLQAQPTGPFASFVQPQ 244


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 151 SASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSP 53
           SA PP P  S+ +T R P     S   S  P+P
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391



 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
 Frame = -1

Query: 142 PPAPRLSSDTTCRGPTSNDQSNGTSPSPSPKDL-----SLRCSTRWRTWPPP 2
           PP P  S     + P  N  SN + P P P        S+    + R+ PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = +1

Query: 127  DEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEEL 306
            +E + +R+   P+ S +  +L+   +T  Q  D D  +  +VD+   QS T+P     + 
Sbjct: 838  EERRPIRRLWWPLRSIRRSLLSQ--LTGHQ-GDYDENIHNDVDKDMNQSSTQPRDPDADH 894

Query: 307  SADIYY 324
             + +Y+
Sbjct: 895  PSSLYH 900


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 568 KSKVTYCVAVTKINNFYQRY 509
           + K   CV +TK+ NFY+ Y
Sbjct: 71  QKKFADCVLLTKVGNFYEMY 90


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 48   SFGDGDGDVPLLWSFDVGPRHVVSDERRGAGGEAD 152
            + GDG  DV ++   D+G   +V +E R A   AD
Sbjct: 1009 AIGDGANDVAMIQKADIGV-GIVGEEGRAAAMSAD 1042


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 187 LNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEELS 309
           LN++ +    +   +AK ++ V+E TKQ + +  + + ELS
Sbjct: 178 LNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELS 218


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 148 ASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSP 53
           +S P P  SS    R       +N  +P+P+P
Sbjct: 593 SSRPTPNASSPLDVRSKQKPSSANSNAPTPAP 624


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 106 RGPTSNDQSNGTSPSPSPKDLSLRCSTRWRTWP 8
           +G  +  ++N T+P+P+  +   R +  WR  P
Sbjct: 618 KGDANTRRANATNPTPTCTNCQTRTTPLWRRSP 650


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -2

Query: 111 RAGVRHRMTRVTVRLHLH 58
           R G++H ++ V+++LHLH
Sbjct: 614 RWGIKHCLSNVSLQLHLH 631


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +1

Query: 130 EVQEVRQTRDPITSFKEKILNHELVTPDQLK-----DIDAKVRKEVDEATKQSK-TEPEV 291
           +VQE  +   P+   KE  L  EL  PD LK     DI+A+++         SK T P +
Sbjct: 55  DVQEPAEETIPLEQDKENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPI 114


>SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 340 RVPSSCSIYRRTTLQYRLLV 281
           R PS   IYR T +QY LL+
Sbjct: 82  RCPSRKPIYRTTRIQYLLLI 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,737
Number of Sequences: 5004
Number of extensions: 53445
Number of successful extensions: 180
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)