Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c24f
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    30   0.38 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    30   0.38 
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    26   6.2  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   8.2  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   8.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   8.2  

>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 294 DAAEERDEQHYDANRDDKDSRGEGVWRQEERD 199
           DA EE +E+  D   ++ D  GEG   +EE D
Sbjct: 173 DADEEEEEEEADEMEEEFDEEGEGDEEEEEED 204


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -2

Query: 387 GSDGRRDLQNEHDAKDHCENVDQAGTLFQGTDAAEERDEQHYDANRDDKDSRGEGVWRQE 208
           G++   D  N +D K+  +NV++        +  EE DE+  + + +D+D  G G  ++ 
Sbjct: 80  GNENEVDNVNNNDKKEDEDNVEENEEEADANEE-EEEDEEDDEEDEEDEDESGGGRRKRA 138

Query: 207 ERD 199
             D
Sbjct: 139 RHD 141


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
 Frame = +1

Query: 10  CNSHTEQTNIVIVIH*YVAKMTQQKELGMKCIKYMLLCITAIFVLTSALTISVGTTIY-- 183
           CNS  +   I +V   Y+A +       +  + ++ +    +++ +  LT ++G   Y  
Sbjct: 198 CNSSIKFRQIFVVFLFYLAGLIITSGFFLNSLSFLKIPFR-VYLDSHDLTPNLGLWWYFF 256

Query: 184 -AIYHDI-SFFLSPYAFSPAIFVIAIGVIMLF------VSLFGCIGALK--ESTCLVNIF 333
             ++++  +FFL  +A  P +FV+ + + + +      ++L G     K   S C ++IF
Sbjct: 257 TEMFNEFRTFFLFVFAILPLMFVLPVSIRLYYLPLPITIALIGLHSLFKAYPSICDLSIF 316

Query: 334 AVILSI 351
             +L I
Sbjct: 317 LSLLPI 322


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 210 EERDVMVDRVN-RSTHGDRQCRC*NKNRCYTQQHVFNALHPQLLLLSHFCNV 58
           ++  V V R +  S+H   +  C N +R  ++   +  +HP +++  H  N+
Sbjct: 49  DDTSVSVVRTSDSSSHCQNEIICLNTHRTISKYEAYGGIHPTIVIHEHQKNL 100


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -2

Query: 390 VGSDGRRDLQNEHDAKDHCENVDQAGTLFQGTDAAEERDEQHYDANRDD--KDSRGEGVW 217
           V  D +RD  N +DA D+ + +++    ++  D  + + E++ DA+ +   K SR   V 
Sbjct: 153 VSWDAKRDRWNGYDATDYKKVIER----YEKLDELQNKGEENRDASENSAVKASRNSTVS 208

Query: 216 RQEE 205
             E+
Sbjct: 209 GSED 212


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 355  FILEIAAAITAYSLRSEVSQFLDKKLREALPLYY 456
            FI  + + ++  SLRS V +F  K+  + LP Y+
Sbjct: 974  FIQHLESEVSFNSLRSFVQEFEKKERLKNLPFYF 1007


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/80 (22%), Positives = 36/80 (45%)
 Frame = -2

Query: 426 FVQKL*DLAAKTVGSDGRRDLQNEHDAKDHCENVDQAGTLFQGTDAAEERDEQHYDANRD 247
           F Q+L +L  +  G       + E D  D  E+ D+  + +   +   E ++Q   + +D
Sbjct: 342 FSQRL-NLDPQKPGKSQGEISEQEEDEYDDAES-DEMHSPYSTHEPESEPEDQDEPSEKD 399

Query: 246 DKDSRGEGVWRQEERDVMVD 187
           D++   E    QE+ +  +D
Sbjct: 400 DENKDVEEEQEQEQEEEQID 419


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 285 EERDEQHYDANRDDKDSRGEGVWRQEERDV 196
           EE ++++ D N DD     E  WR   R +
Sbjct: 331 EEAEDEYIDVNTDDSLESAEYRWRSHMRSM 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,284
Number of Sequences: 5004
Number of extensions: 58995
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)