Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1c20r
(861 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC012606-1|AAH12606.1| 324|Homo sapiens proteasome (prosome, ma... 229 1e-59
BC000338-1|AAH00338.1| 326|Homo sapiens PSMD7 protein protein. 229 1e-59
D50063-1|BAA08780.1| 324|Homo sapiens proteasome subunit p40 / ... 225 2e-58
U70735-1|AAD03469.1| 297|Homo sapiens 34 kDa Mov34 homolog prot... 53 2e-06
BC002520-1|AAH02520.2| 327|Homo sapiens COP9 constitutive photo... 53 2e-06
U94855-1|AAD03467.1| 357|Homo sapiens translation initiation fa... 38 0.062
CR456959-1|CAG33240.1| 357|Homo sapiens EIF3S5 protein. 38 0.062
BT006894-1|AAP35540.1| 357|Homo sapiens eukaryotic translation ... 38 0.062
BC000490-1|AAH00490.1| 357|Homo sapiens eukaryotic translation ... 38 0.062
AK095574-1|BAC04577.1| 350|Homo sapiens protein ( Homo sapiens ... 38 0.062
AF354444-1|AAK18634.1| 348|Homo sapiens IFP38 protein. 34 0.76
BC062339-1|AAH62339.1| 458|Homo sapiens alkB, alkylation repair... 32 2.3
>BC012606-1|AAH12606.1| 324|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog)
protein.
Length = 324
Score = 229 bits (559), Expect = 1e-59
Identities = 108/154 (70%), Positives = 127/154 (82%)
Frame = -2
Query: 860 DLGLPTEAYQAVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXEHLLRDIKDTTVGSLSQ 681
DLGLPTEAY +VEEVHDDGTPTS+TFEHV SEI EHLLRDIKDTTVG+LSQ
Sbjct: 130 DLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQ 189
Query: 680 RITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNL 501
RITNQ+ GLKGL+S+L +IR YL +V G LP+NHQIIYQLQD+FNLLPD++ F+
Sbjct: 190 RITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAF 249
Query: 500 YVKTNDQSLVVYLAALVRSIIALHNLINNKITNR 399
Y+KTNDQ +VVYLA+L+RS++ALHNLINNKI NR
Sbjct: 250 YLKTNDQMVVVYLASLIRSVVALHNLINNKIANR 283
>BC000338-1|AAH00338.1| 326|Homo sapiens PSMD7 protein protein.
Length = 326
Score = 229 bits (559), Expect = 1e-59
Identities = 108/154 (70%), Positives = 127/154 (82%)
Frame = -2
Query: 860 DLGLPTEAYQAVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXEHLLRDIKDTTVGSLSQ 681
DLGLPTEAY +VEEVHDDGTPTS+TFEHV SEI EHLLRDIKDTTVG+LSQ
Sbjct: 130 DLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQ 189
Query: 680 RITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNL 501
RITNQ+ GLKGL+S+L +IR YL +V G LP+NHQIIYQLQD+FNLLPD++ F+
Sbjct: 190 RITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAF 249
Query: 500 YVKTNDQSLVVYLAALVRSIIALHNLINNKITNR 399
Y+KTNDQ +VVYLA+L+RS++ALHNLINNKI NR
Sbjct: 250 YLKTNDQMVVVYLASLIRSVVALHNLINNKIANR 283
>D50063-1|BAA08780.1| 324|Homo sapiens proteasome subunit p40 /
Mov34 protein protein.
Length = 324
Score = 225 bits (550), Expect = 2e-58
Identities = 107/154 (69%), Positives = 126/154 (81%)
Frame = -2
Query: 860 DLGLPTEAYQAVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXEHLLRDIKDTTVGSLSQ 681
DLGLPTEAY +VEE DDGTPTS+TFEHV SEI EHLLRDIKDTTVG+LSQ
Sbjct: 130 DLGLPTEAYISVEEDQDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQ 189
Query: 680 RITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNL 501
RITNQ+ GLKGL+S+L +IR YL +VG G LP+NHQIIYQLQD+FNLLPD++ F+
Sbjct: 190 RITNQVHGLKGLNSKLLDIRSYLEKVGTGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAF 249
Query: 500 YVKTNDQSLVVYLAALVRSIIALHNLINNKITNR 399
Y+KTNDQ +VVYLA+L+RS++ALHNLINNKI NR
Sbjct: 250 YLKTNDQMVVVYLASLIRSVVALHNLINNKIANR 283
>U70735-1|AAD03469.1| 297|Homo sapiens 34 kDa Mov34 homolog
protein.
Length = 297
Score = 52.8 bits (121), Expect = 2e-06
Identities = 23/92 (25%), Positives = 50/92 (54%)
Frame = -2
Query: 692 SLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNF 513
++++ + Q +K LHS++ I +Y+ G +P NH+I+ + + + LP ++ D F
Sbjct: 186 TVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKF 245
Query: 512 IDNLYVKTNDQSLVVYLAALVRSIIALHNLIN 417
+ Y + ND L+ YL + ++ ++ +N
Sbjct: 246 KTDFYDQCNDVGLMAYLGTITKTCNTMNQFVN 277
>BC002520-1|AAH02520.2| 327|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 6 (Arabidopsis)
protein.
Length = 327
Score = 52.8 bits (121), Expect = 2e-06
Identities = 23/92 (25%), Positives = 50/92 (54%)
Frame = -2
Query: 692 SLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNF 513
++++ + Q +K LHS++ I +Y+ G +P NH+I+ + + + LP ++ D F
Sbjct: 216 TVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKF 275
Query: 512 IDNLYVKTNDQSLVVYLAALVRSIIALHNLIN 417
+ Y + ND L+ YL + ++ ++ +N
Sbjct: 276 KTDFYDQCNDVGLMAYLGTITKTCNTMNQFVN 307
>U94855-1|AAD03467.1| 357|Homo sapiens translation initiation
factor 3 47 kDa subunit protein.
Length = 357
Score = 37.5 bits (83), Expect = 0.062
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = -2
Query: 647 LHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSLVV 468
+ L+ + Y V G + ++ + L + N +P I D+F L ND +V
Sbjct: 279 IQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVT 338
Query: 467 YLAALVRSIIALHNLINN 414
YLA L +S IAL+ + N
Sbjct: 339 YLANLTQSQIALNEKLVN 356
>CR456959-1|CAG33240.1| 357|Homo sapiens EIF3S5 protein.
Length = 357
Score = 37.5 bits (83), Expect = 0.062
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = -2
Query: 647 LHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSLVV 468
+ L+ + Y V G + ++ + L + N +P I D+F L ND +V
Sbjct: 279 IQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVT 338
Query: 467 YLAALVRSIIALHNLINN 414
YLA L +S IAL+ + N
Sbjct: 339 YLANLTQSQIALNEKLVN 356
>BT006894-1|AAP35540.1| 357|Homo sapiens eukaryotic translation
initiation factor 3, subunit 5 epsilon, 47kDa protein.
Length = 357
Score = 37.5 bits (83), Expect = 0.062
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = -2
Query: 647 LHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSLVV 468
+ L+ + Y V G + ++ + L + N +P I D+F L ND +V
Sbjct: 279 IQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVT 338
Query: 467 YLAALVRSIIALHNLINN 414
YLA L +S IAL+ + N
Sbjct: 339 YLANLTQSQIALNEKLVN 356
>BC000490-1|AAH00490.1| 357|Homo sapiens eukaryotic translation
initiation factor 3, subunit 5 epsilon, 47kDa protein.
Length = 357
Score = 37.5 bits (83), Expect = 0.062
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = -2
Query: 647 LHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSLVV 468
+ L+ + Y V G + ++ + L + N +P I D+F L ND +V
Sbjct: 279 IQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVT 338
Query: 467 YLAALVRSIIALHNLINN 414
YLA L +S IAL+ + N
Sbjct: 339 YLANLTQSQIALNEKLVN 356
>AK095574-1|BAC04577.1| 350|Homo sapiens protein ( Homo sapiens
cDNA FLJ38255 fis, clone FCBBF3001020, highly similar to
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 5. ).
Length = 350
Score = 37.5 bits (83), Expect = 0.062
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = -2
Query: 647 LHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSLVV 468
+ L+ + Y V G + ++ + L + N +P I D+F L ND +V
Sbjct: 272 IQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVT 331
Query: 467 YLAALVRSIIALHNLINN 414
YLA L +S IAL+ + N
Sbjct: 332 YLANLTQSQIALNEKLVN 349
>AF354444-1|AAK18634.1| 348|Homo sapiens IFP38 protein.
Length = 348
Score = 33.9 bits (74), Expect = 0.76
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -2
Query: 560 LQDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALH 429
L + N +P I D+F L+ ND +V YLA L +S IAL+
Sbjct: 299 LMSLVNQVPKIVPDDFETMLHSNINDLLMVAYLANLTQSQIALN 342
>BC062339-1|AAH62339.1| 458|Homo sapiens alkB, alkylation repair
homolog 5 (E. coli) protein.
Length = 458
Score = 32.3 bits (70), Expect = 2.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 170 VLHFCFLYFIKISNFIFPWTCACKFLKN 87
V FCFL+F+ + +IFPW C LKN
Sbjct: 410 VFVFCFLFFLIL--YIFPWFCCLLGLKN 435
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,214,328
Number of Sequences: 237096
Number of extensions: 1603492
Number of successful extensions: 2936
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2936
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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