Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c20r
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...   189   3e-48
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    30   2.4  

>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score =  189 bits (460), Expect = 3e-48
 Identities = 87/152 (57%), Positives = 117/152 (76%)
 Frame = -2

Query: 860 DLGLPTEAYQAVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXEHLLRDIKDTTVGSLSQ 681
           ++GLPTEAY  V+EVHDDGTP  +TFEHVPS+I          EHLLRDIKD T G+LSQ
Sbjct: 163 NIGLPTEAYIEVQEVHDDGTPPIKTFEHVPSDIGAEEAEEVGVEHLLRDIKDQTAGTLSQ 222

Query: 680 RITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNL 501
           RIT+QL+GL+GL SQL  I  YL  + +G+LP+NH +IY +Q++ NLLPD+ + ++I + 
Sbjct: 223 RITDQLMGLRGLQSQLESIEKYLHDIVRGTLPVNHHVIYYVQEVLNLLPDVTHPDYIVSQ 282

Query: 500 YVKTNDQSLVVYLAALVRSIIALHNLINNKIT 405
            V+TNDQ + VY+ +LVRS++ALHNLI+NKI+
Sbjct: 283 NVQTNDQLMCVYMGSLVRSVVALHNLIDNKIS 314


>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = -2

Query: 725 LLRDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLP-MNHQIIYQLQDI 549
           + +D++DT+ G +S   T +      +HS L +  +++V   Q   P M  ++I++    
Sbjct: 239 IYQDLRDTSKGKISSSFTLESTTKSSIHSLLIDEHNWVVDQIQKKFPDMGLELIFEEARK 298

Query: 548 FNLLPDIANDNFIDNLYVKTNDQSLVVY 465
           F ++ ++ +  F   L +   D+++  Y
Sbjct: 299 F-VIAELQHITFEQFLPILLGDETMKKY 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,957,967
Number of Sequences: 27780
Number of extensions: 263151
Number of successful extensions: 645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)