Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1c20f
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 198 8e-52
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 57 3e-09
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 48 2e-06
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 36 0.005
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 28 1.1
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 27 1.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.9
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 27 2.5
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 27 3.4
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 4.4
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 5.9
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce... 26 5.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 5.9
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 7.8
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 7.8
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 198 bits (482), Expect = 8e-52
Identities = 88/149 (59%), Positives = 120/149 (80%)
Frame = +1
Query: 241 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 420
D +NR +K G ++RVVG+LLG V++V+NS+A+PF+ED+K+ SVWFLDH+++E+M
Sbjct: 29 DSYNRSAK-GTKRRVVGILLG-QNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMN 86
Query: 421 GMFKKVNAREKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQ 600
MFKK+NA EK+VGWYHTGP+L +D+ IN L+++Y PN VLVIID KPK +GLPT AY
Sbjct: 87 EMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYF 146
Query: 601 AVEEVHDDGTPTSRTFEHVPSEIGAEEAE 687
A++E+ DDG+ +SRTF H+PS I AEEAE
Sbjct: 147 AIDEIEDDGSKSSRTFVHLPSSIEAEEAE 175
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 56.8 bits (131), Expect = 3e-09
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 241 DHFNRMSKIGNQKRVVGVLLGCWRAKG-VLDVSNSFAVPFDEDDKDKSVWFLDHDYLENM 417
DH R S+ N +RV+G LLG G +++ + FAVP +E + V + +Y M
Sbjct: 35 DHSTRKSE--NNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEV---EMEYHRAM 89
Query: 418 YGMFKKVNAREKVVGWYHTGPKLHQNDIAINEL 516
Y + K N RE VVGWY T P L I L
Sbjct: 90 YHLHLKANPREVVVGWYATSPDLDAFSALIQNL 122
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 47.6 bits (108), Expect = 2e-06
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Frame = +1
Query: 253 RMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFK 432
R + G V+G++LG + + V + FA+P + SV +D + +NM M K
Sbjct: 42 RHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMP--QSGTGVSVEAVDPVFQKNMMDMLK 99
Query: 433 KVNAREKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 558
+ E VVGWYH+ P L DI + + P +V V++D
Sbjct: 100 QTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVD 145
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 35.9 bits (79), Expect = 0.005
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +1
Query: 268 GNQKRVVGVLLGCWRAKGV-LDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNA 444
G V+G + G + +G L + +SFA+P + + + +Y + + K V
Sbjct: 52 GMPLEVMGYVQG--KVEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYR 109
Query: 445 REKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIIDAK 564
E V+GWYH+ P L D+ ++Y V V++D K
Sbjct: 110 HENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPK 153
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 264 NRESETSSRCSIGLLESQGCLRRIEQLRSPV 356
NRE E SS +G + GC R++ Q+R V
Sbjct: 210 NREDEESSLAEVGYDDIGGCRRQMAQIRELV 240
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 79 MNNNFVI*NRTATNPEYISKNTYVKIIKMPSQE 177
+ NNFV N A E K TY+ + MPS E
Sbjct: 49 LKNNFVEENDNAVLKEEPGKYTYMSLFTMPSTE 81
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -2
Query: 476 PVWYQPTTFSLALTFLNIPYMFSK*SWSRNQTDLSLSSSS--NGTAKLFDTSKTPLALQQ 303
PV T S ++ + + P + S S S + T +S +S++ GT+ TS T + L
Sbjct: 585 PVTTTNCTTSTSVLYTSTP-ITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTS 643
Query: 302 PNRTPTT 282
NRT TT
Sbjct: 644 TNRTSTT 650
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -3
Query: 388 TRQICLCRLHQTGLRSCSIRLRHPWLSNNPIEHRLLVSD 272
T++ + G+R C +++ HPWL + E + + D
Sbjct: 753 TKKCAMTTSRVLGVRICGMQVWHPWLQSYTFEDKYVGRD 791
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -2
Query: 395 SRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRT 291
S Q+ LSL +SSNGT + T P+ L +PN T
Sbjct: 182 SSKQSLLSLKNSSNGTVYVSTTLPCPVEL-KPNIT 215
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -2
Query: 137 LLIYSGFVAVLFYITKLLFIKLHEIRVTYYYLLCRLGQLKF 15
+++Y + +L + L+ LH++RV Y++L Q F
Sbjct: 377 MMLYGFILGILALVVHLVLDVLHKVRVQPYFVLYSAMQFGF 417
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 550 IIDAKPKDLGLPTEAYQAVEEVHDDGTPTSRTFEHVPSEIGAEEA 684
I +P+ LG+ + Y + EV DGT + E +E EE+
Sbjct: 197 IESVRPEALGISDDDYIQIYEVFGDGTDYAFALEDEDAEDELEES 241
>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 106 YFILQSYYSLNYTKL 62
YF+ Q +YS NYTKL
Sbjct: 13 YFVRQYFYSGNYTKL 27
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +2
Query: 365 TTKTNLSGSLTMIT 406
TTK+NLSG+L M+T
Sbjct: 182 TTKSNLSGNLNMVT 195
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 532 PNSVLVIIDAKPKDLGLPT-EAYQAVEEVHDD 624
P+ L + D+KP+ LG+ T + Y +V DD
Sbjct: 567 PDHTLRVKDSKPESLGIDTVKQYTGYLDVEDD 598
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 331 VSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGP 480
V +S + F DD + L + +E ++ +FK+ NA +++GW ++ P
Sbjct: 794 VISSLSAIFIRDDTEND---LVTELVEKLF-LFKQYNACMQLIGWLNSDP 839
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,628
Number of Sequences: 5004
Number of extensions: 54940
Number of successful extensions: 162
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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