Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c17r
         (660 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC039593-1|AAH39593.1|  913|Homo sapiens ubiquitin specific pept...    30   6.4  
AY074877-1|AAL79676.1|  913|Homo sapiens pVHL-interacting deubiq...    30   6.4  
AL158207-6|CAC88170.1|  914|Homo sapiens ubiquitin specific pept...    30   6.4  
AB023220-1|BAA76847.2|  917|Homo sapiens KIAA1003 protein protein.     30   6.4  

>BC039593-1|AAH39593.1|  913|Homo sapiens ubiquitin specific
           peptidase 20 protein.
          Length = 913

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 163 VMLATFKQCCYICQASVDSETRLTCPLDPVSDTFN 59
           V L TF+  CY C+  V  E RL  PL   S  F+
Sbjct: 74  VNLTTFRLWCYACEKEVFLEQRLAAPLLGSSSKFS 108


>AY074877-1|AAL79676.1|  913|Homo sapiens pVHL-interacting
           deubiquitinating enzyme 2 protein.
          Length = 913

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 163 VMLATFKQCCYICQASVDSETRLTCPLDPVSDTFN 59
           V L TF+  CY C+  V  E RL  PL   S  F+
Sbjct: 74  VNLTTFRLWCYACEKEVFLEQRLAAPLLGSSSKFS 108


>AL158207-6|CAC88170.1|  914|Homo sapiens ubiquitin specific
           peptidase 20 protein.
          Length = 914

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 163 VMLATFKQCCYICQASVDSETRLTCPLDPVSDTFN 59
           V L TF+  CY C+  V  E RL  PL   S  F+
Sbjct: 74  VNLTTFRLWCYACEKEVFLEQRLAAPLLGSSSKFS 108


>AB023220-1|BAA76847.2|  917|Homo sapiens KIAA1003 protein protein.
          Length = 917

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 163 VMLATFKQCCYICQASVDSETRLTCPLDPVSDTFN 59
           V L TF+  CY C+  V  E RL  PL   S  F+
Sbjct: 78  VNLTTFRLWCYACEKEVFLEQRLAAPLLGSSSKFS 112


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,070,158
Number of Sequences: 237096
Number of extensions: 1801642
Number of successful extensions: 3934
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3934
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)