Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c17r
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical...    29   2.2  
Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U49829-6|AAA93387.1|  498|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical
           protein Y39B6A.29 protein.
          Length = 453

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 165 SSCWQLLSNAVISVKLPLIPKHV*HALSILFQIHLIIGNCYYN 37
           S  +Q L + V+    P+IP +V    +I   IHLII N ++N
Sbjct: 400 SKLYQALGSCVLFFASPIIPLYV---YTIGVSIHLIIANVFFN 439


>Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 620 CNRTFQIFTNKDLHD-HIEMGACSSCCESSDNGVNVVDNPGQAWEHPSSVNVVDGPPS 450
           C+  + IF+ KD  D H ++ + SS   + D+ V   ++PG A E     +  D PP+
Sbjct: 56  CSSLYTIFSAKDAGDSHHDLSSHSS---ADDDDVPAYNHPGSATEDDDDDDDDDEPPT 110


>Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 620 CNRTFQIFTNKDLHD-HIEMGACSSCCESSDNGVNVVDNPGQAWEHPSSVNVVDGPPS 450
           C+  + IF+ KD  D H ++ + SS   + D+ V   ++PG A E     +  D PP+
Sbjct: 56  CSSLYTIFSAKDAGDSHHDLSSHSS---ADDDDVPAYNHPGSATEDDDDDDDDDEPPT 110


>U49829-6|AAA93387.1|  498|Caenorhabditis elegans Hypothetical
           protein F27D9.2 protein.
          Length = 498

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 502 PGLSTTFTPLSDDSQQLLQAPISI*SCKSLFVNI*NV 612
           PGL   F+PL ++   +L   ISI +  +LF  I NV
Sbjct: 188 PGLQLLFSPLGENGINILGLNISIYTSPALFCLILNV 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,413,078
Number of Sequences: 27780
Number of extensions: 301739
Number of successful extensions: 725
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)