Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c17f
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    28   0.91 
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   2.1  
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    27   2.1  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   2.8  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   4.8  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    25   8.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   8.5  

>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 225 LKVGPLGGPSTTLTEEGCSQAWPGLSTTFTPLSDDSQQLLQA 100
           ++  P G    T  +EG    W   +T  T L+DD+++L  A
Sbjct: 73  VRFNPEGNILATAGDEGTIMLWVPTNTPITTLADDAEELALA 114


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +1

Query: 358 RVLKKNIELLNKDPHRSDVRKQQIRLYCSDSRSSLAAANKIL*IYPSSCW-QLLSNAVIS 534
           + L +++ +L+KD + S     + +   ++S SSL   + IL    SS W QLL     S
Sbjct: 287 KTLSQSVLVLSKDGNASSSGGTENQ--SANSSSSLMEKDAIL---SSSSWSQLLYLRCSS 341

Query: 535 VKLPLIPKHV*HALSILFQIHL 600
            KL  IPK+V  +L  L  + L
Sbjct: 342 CKLKSIPKNVFLSLQSLVSLDL 363


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 404 LCGSLFSNSIFFLRTRLQFF 345
           LCG+LF +  F ++TR+Q +
Sbjct: 140 LCGALFGSPFFLVKTRMQSY 159


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 436 YCSDSRSSLAAANKIL*IYPSSCWQLLSNAVISVKLP-LIPKH 561
           + SDSRSS+A  N I    PS    +L N  +  + P L+P+H
Sbjct: 150 FLSDSRSSIATLNAI----PSLDQSVLLNPNLRARTPSLVPEH 188


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 56  QIFTNKDLHD-HIEMGACSSCCESSDNGVNVVDNP 157
           +++T KDL   HI +  C    +  +N + V+ NP
Sbjct: 839 KLYTRKDLISIHISLAMCYWWSKDHENAIKVLKNP 873


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 496 MDKFTKSCLQLPMKISNQNNKVVSAVYE 413
           ++KF K CL+  +K+  ++  V    YE
Sbjct: 132 LEKFKKRCLKHGLKLQGESTSVNQGTYE 159


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 280 SNLTFRFVNHINHRCLS---DYH*SKNCSRVLKKNIELLNKDPHRSDVRKQQ 426
           S L  R +   +H  +S   D   SK+ + VL  +I +LN D H  +++ Q+
Sbjct: 644 SQLIERVLETFSHYYMSANPDSMSSKDAAFVLSYSIIMLNTDQHNPNIKSQR 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,430
Number of Sequences: 5004
Number of extensions: 46492
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)