Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1c14r
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0506 + 4017568-4017716,4018171-4018474 30 1.6
12_01_0204 + 1539859-1540158 30 1.6
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 30 1.6
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 29 3.7
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 29 3.7
12_02_0820 + 23437811-23440230,23440336-23440534 28 6.5
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 28 6.5
05_03_0478 - 14526180-14526578 28 6.5
03_05_0892 + 28563151-28563669,28563977-28564035,28564170-285642... 28 6.5
01_06_0034 + 25769436-25769701,25769749-25769887 28 8.6
>12_01_0506 + 4017568-4017716,4018171-4018474
Length = 150
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 77 TADLGCVVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGS 256
T +L V+ + ++ DG ++ ++ E D+E++ D Y + DV + V E GS
Sbjct: 72 TGELDVAYIYVEEPEIVDLCDGSADNSNYEADMELKVDSEEEYVNMDVEVD--VGEATGS 129
Query: 257 GSLSNDVLK-GKSSGS 301
G V + G++SGS
Sbjct: 130 GCKGKAVEEHGEASGS 145
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 520 YAGSWSPPGASDIINFSGRVTDVKADD 440
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +2
Query: 146 SNFASEEIDLEVRFDIANSYCSSDVTDN---DVVCEGDGSGSLSNDVLKGKSSG 298
SN +D E +A C D+ + D++ EGD G L+ D + G
Sbjct: 54 SNSMKMHVDAETAGGVALDVCKGDILEKKQCDIIAEGDRGGVLTVDTCNAEEDG 107
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = -1
Query: 343 EGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSD--IGAAITIGDVKSNLQI 170
E +R +R+L + +A + V + S N +S+ IGA I +G + N ++
Sbjct: 1447 EPAVRALNRLLDEEYNAEIAATSEVVDLLVSFVPGTNHQLSEACIGALIKLGKDRPNCKL 1506
Query: 169 NLFGREVGPAVNNFLEKIPVYLTDYAAEVSRVL 71
+ + V + + +PV ++ AE+ R+L
Sbjct: 1507 EMVKAGIIEHVLDMILDVPVSVSSSIAELLRIL 1539
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 636 CGTADTQARARAKMKAFIVDWIL 704
C DTQ +KM+A + DWI+
Sbjct: 210 CDYIDTQVEINSKMRAILADWII 232
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 50 DELGDVLQNTADLGC-VVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTD 226
D+L +Q+ ++ VR + + + ++ WS+ EEI DI + Y S D
Sbjct: 252 DKLATYMQDIFNITAKAVRGDEESVALQAIEFWSSICDEEI------DILDEYSSEFTAD 305
Query: 227 NDVVC 241
+DV C
Sbjct: 306 SDVPC 310
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 634 RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 539
RDV+ PN + + D+ N +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249
>05_03_0478 - 14526180-14526578
Length = 132
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -3
Query: 152 SWTSRQQLPREDPCLPDGLRS---RGQPCSGVRRPTRH 48
SW RQ+ ED DG R RGQ RRP RH
Sbjct: 54 SWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRH 91
>03_05_0892 +
28563151-28563669,28563977-28564035,28564170-28564295,
28564460-28564595,28564901-28565209
Length = 382
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 180 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAETTD 359
LDL + P S ML +ETE++A S +P E L + SP TT
Sbjct: 279 LDLMEQEELTLPPSQQKMLRVKETESLADHQKLSAGNPQEDDTLSSSSPFS-SPRTSTTS 337
Query: 360 A 362
+
Sbjct: 338 S 338
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 215 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 325
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,714,690
Number of Sequences: 37544
Number of extensions: 350718
Number of successful extensions: 1181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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