Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c14f
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    31   0.14 
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    27   2.2  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   3.9  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    26   5.2  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   6.8  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   9.0  

>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 137 ITMSRMR*ELGSKSTSRCGTADTQARARAKMKAFI 33
           I   +MR ELG   T RC   D QA    K+K FI
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQADIEFKVKGFI 246


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 514 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYA 630
           AITIGD  + L  +   +++GP V +F  + +P +LT ++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS 217


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 507 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 388
           +  DN ++     SGS + D +  +  G+E+ +D  EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 458 SATTFSRASPPEAKDLRTRLKMRISPSAETTDAETLGTARTKLSRV 321
           S+  FSR+ PPE+K+    L       + T+  + L  A+ +L+ V
Sbjct: 152 SSLQFSRSQPPESKESDATLAKCWKEKSLTSSCKFLFEAKERLTSV 197


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 189 ERISRSQQFTDFIEQV*DHDVKDA 118
           E +SR QQF D +  +   ++KDA
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDA 86


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 563 PKRLIWRLDLTSPI 522
           PK LIWR  LT+P+
Sbjct: 436 PKELIWRSRLTNPV 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,484
Number of Sequences: 5004
Number of extensions: 38203
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)