Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1c14f
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0204 + 1539859-1540158 30 1.3
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 30 1.3
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 29 3.0
12_01_0506 + 4017568-4017716,4018171-4018474 29 4.0
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 28 5.3
03_05_0892 + 28563151-28563669,28563977-28564035,28564170-285642... 28 5.3
01_06_0034 + 25769436-25769701,25769749-25769887 28 7.0
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 27 9.3
12_01_0149 - 1150949-1151041,1151145-1151190,1151343-1151460,115... 27 9.3
06_03_0291 + 19198302-19198333,19199218-19199734,19200171-192003... 27 9.3
05_05_0321 + 24091997-24092530 27 9.3
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 27 9.3
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 202 YAGSWSPPGASDIINFSGRVTDVKADD 282
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -1
Query: 576 SNFASEEIDLEVRFDIANSYCSSDVTDN---DVVCEGDGSGSLSNDVLKGKSSG 424
SN +D E +A C D+ + D++ EGD G L+ D + G
Sbjct: 54 SNSMKMHVDAETAGGVALDVCKGDILEKKQCDIIAEGDRGGVLTVDTCNAEEDG 107
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 86 CGTADTQARARAKMKAFIVDWIL 18
C DTQ +KM+A + DWI+
Sbjct: 210 CDYIDTQVEINSKMRAILADWII 232
>12_01_0506 + 4017568-4017716,4018171-4018474
Length = 150
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -1
Query: 594 EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLK-GKSSGS 421
++ DG ++ ++ E D+E++ D Y + DV + V E GSG V + G++SGS
Sbjct: 89 DLCDGSADNSNYEADMELKVDSEEEYVNMDVEVD--VGEATGSGCKGKAVEEHGEASGS 145
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 88 RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 183
RDV+ PN + + D+ N +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249
>03_05_0892 +
28563151-28563669,28563977-28564035,28564170-28564295,
28564460-28564595,28564901-28565209
Length = 382
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -2
Query: 542 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAETTD 363
LDL + P S ML +ETE++A S +P E L + SP TT
Sbjct: 279 LDLMEQEELTLPPSQQKMLRVKETESLADHQKLSAGNPQEDDTLSSSSPFS-SPRTSTTS 337
Query: 362 A 360
+
Sbjct: 338 S 338
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 507 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 397
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = -1
Query: 507 DVTDNDVV---CEGDGSGSLSNDVLKGKSSGSER 415
++ +ND++ C G G+GS S DVL +SG E+
Sbjct: 73 ELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEK 106
>12_01_0149 -
1150949-1151041,1151145-1151190,1151343-1151460,
1151541-1151637,1151711-1151908,1152024-1152086,
1152384-1152443,1152558-1152660,1154398-1154507
Length = 295
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -1
Query: 582 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSE 418
GWSN D D+A + S + +D+ E +L D+LK + SE
Sbjct: 66 GWSNLVCSREDHAKSVDVAVLFLGSKLQSSDISKEKQADSTLV-DMLKNSFASSE 119
>06_03_0291 +
19198302-19198333,19199218-19199734,19200171-19200383,
19201067-19201111,19201671-19201945,19202041-19202152,
19202453-19202539,19202727-19202963,19204127-19204825
Length = 738
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2
Query: 611 TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVA 459
TG F+ +L G + L W LD TS V + P S + + E EA A
Sbjct: 564 TGFFNSDVLKGGDFCGEELLTWALDPTS--VSSLPSSTRTVKTMSEVEAFA 612
>05_05_0321 + 24091997-24092530
Length = 177
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/78 (21%), Positives = 31/78 (39%)
Frame = -1
Query: 621 RQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVL 442
RQV R E++ S+F+ + + ++ D +N GDG G +
Sbjct: 15 RQVGRSREEELLGLLSDFSGDSGEFGRELSFSDLVVVEDTANNPSPRGGDGGGDRAAPTA 74
Query: 441 KGKSSGSERPQDAAENAD 388
+G RP ++E +
Sbjct: 75 AAAENGQARPSSSSEQEE 92
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 492 DVVCEGDGSGSLSNDVLKGKSSGSERPQDAA 400
+V C G G G+++ D +G SG R DAA
Sbjct: 120 NVGCIGGGGGNITVDGFRGGGSGGGRGGDAA 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,342,518
Number of Sequences: 37544
Number of extensions: 298366
Number of successful extensions: 1017
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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