Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c14f
         (630 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1693|AAF50239.2| 1937|Drosophila melanogaster CG3280-PA...    34   0.18 
AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA ...    33   0.32 
L08825-1|AAA28914.1|  723|Drosophila melanogaster single-strande...    29   5.2  
BT022375-1|AAY54791.1|  246|Drosophila melanogaster IP08087p pro...    28   9.1  
AE014297-565|AAN13344.2|  246|Drosophila melanogaster CG31493-PA...    28   9.1  

>AE014296-1693|AAF50239.2| 1937|Drosophila melanogaster CG3280-PA
            protein.
          Length = 1937

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 41/160 (25%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
 Frame = -2

Query: 590  LLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDL 411
            L T  PT+ P  L   L  T P  +   +  T+  +   T A  +ATT S  S  E    
Sbjct: 647  LPTTLPTTFPTTLPTTLPTTLPTALPTTLPTTLPTTLPSTLATTTATTSSIWSTTEETSP 706

Query: 410  RTRLKM---RISPSAETTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRP-EKL 243
             T        + PS  TT+A T     T  +   +  T +      +S L+  T+P  K 
Sbjct: 707  TTTTTSPWTTLPPSTTTTEATTTTERATTTTEATSTTTLKITTAEINSTLSDTTKPLGKS 766

Query: 242  MMSDAPGGLQEPA*PSRRRGSAALNNSPI-SLNKFEITMS 126
            + ++ P      A  S    +    N P+ S  K   T S
Sbjct: 767  IDTEIPNSTTNSATLSTIPATLNTTNLPLNSTTKLTTTTS 806


>AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA
            protein.
          Length = 1286

 Score = 33.1 bits (72), Expect = 0.32
 Identities = 28/109 (25%), Positives = 43/109 (39%)
 Frame = -2

Query: 584  TAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRT 405
            T+GPT+   R   +    +P     P S T   ++R T     +TT +  S P     R+
Sbjct: 984  TSGPTTTTPRSTTKTSTCAP-TTTTPRSTTTTSTSRPTTTTPRSTTTTTTSRPTTTTPRS 1042

Query: 404  RLKMRISPSAETTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVT 258
                  S    TT   T  T+ ++    PT  T R   +  + A T+ T
Sbjct: 1043 TTTPSTSRPTTTTPRSTTTTSTSR----PTTTTPRSTTKTSTCAPTTTT 1087



 Score = 28.7 bits (61), Expect = 6.9
 Identities = 28/109 (25%), Positives = 39/109 (35%)
 Frame = -2

Query: 584 TAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRT 405
           T+GPT+   R        SP     P S T   ++R T     +TT +    P     R+
Sbjct: 504 TSGPTTTTPRSTTTTCTCSP-TTTTPRSTTTPSTSRPTTTTPRSTTTTCTCSPTTTTPRS 562

Query: 404 RLKMRISPSAETTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVT 258
                 S    TT   T  T  ++    PT  T R      +S  T+ T
Sbjct: 563 TTTTSTSRPTTTTPRSTTTTTTSR----PTTTTPRSTTTTSTSGPTTTT 607


>L08825-1|AAA28914.1|  723|Drosophila melanogaster single-stranded
           recognition proteinprotein.
          Length = 723

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -1

Query: 585 DGWSNFASEEIDL---EVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSER 415
           DG S+  S + D    E   D+A  Y S++ +D+D   +  G G  S+   K K   SE+
Sbjct: 469 DGDSDEESTDEDFKPNENESDVAEEYDSNEESDSDEDSDASGGGGDSDGAKKKKEKKSEK 528

Query: 414 PQ 409
            +
Sbjct: 529 KE 530


>BT022375-1|AAY54791.1|  246|Drosophila melanogaster IP08087p
           protein.
          Length = 246

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 211 SQRSRHGGEDQPLSTIHRFH*TSLRSRCQGCAEN 110
           SQ S+  G    + T+H++H + LRS C   AE+
Sbjct: 196 SQSSQIMGRQLGMKTMHKWHFSELRSLCGAMAES 229


>AE014297-565|AAN13344.2|  246|Drosophila melanogaster CG31493-PA
           protein.
          Length = 246

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 211 SQRSRHGGEDQPLSTIHRFH*TSLRSRCQGCAEN 110
           SQ S+  G    + T+H++H + LRS C   AE+
Sbjct: 196 SQSSQIMGRQLGMKTMHKWHFSELRSLCGAMAES 229


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,851,799
Number of Sequences: 53049
Number of extensions: 481899
Number of successful extensions: 1558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)