Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1c14f
(630 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 29 2.1
Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical pr... 29 2.7
U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical p... 29 2.7
AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog... 29 2.7
Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 28 6.3
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 28 6.3
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -2
Query: 482 ARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAETTDAETLGTARTKLSRVPT*LTR 303
A + E +S + ++ EAK + K + PSA ++D + T T +++ P T+
Sbjct: 689 AEKPEGSSSGSATEKSKEIEAKSKKDDTKKPLEPSAASSDPSSSSTTTTTITKEPP--TQ 746
Query: 302 RKCRELKSSALTSVTRPEKLMMSDAPGG 219
++A + +P + + A G
Sbjct: 747 SASASGAAAAAAASAQPSESSSATAASG 774
>Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical
protein F10B5.4 protein.
Length = 426
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 214 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 318
W+ S ++NF GRVT +F +H Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386
>U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical
protein ZK1290.10 protein.
Length = 412
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = -2
Query: 545 RLDLTSPIVIAAPMSLTMM-LSARETEAVASATTFSRASP-----PEAKDLRTRLKMRIS 384
RLD T P+ A P+ L ++ ++ +E + AS T+ A P P A + +
Sbjct: 59 RLDNTIPVPPALPIGLPIIQITTKEPQPPASLTSLPAAPPSAQVAPPAIRPPEAKRTSLE 118
Query: 383 PSAETTDAETLGTARTKLSRVPT 315
P +T ++ + T L R PT
Sbjct: 119 PPQPSTPQASISSTTTVLIRNPT 141
>AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog
protein.
Length = 426
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 214 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 318
W+ S ++NF GRVT +F +H Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386
>Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 618 QVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEG 475
Q +RD EV+D F EE+D EV D + + D D EG
Sbjct: 28 QAERDGWNEVIDNVGEFEDEEVDEEV--DEEEDHAEDEERDTDDEVEG 73
>Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 618 QVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEG 475
Q +RD EV+D F EE+D EV D + + D D EG
Sbjct: 28 QAERDGWNEVIDNVGEFEDEEVDEEV--DEEEDHAEDEERDTDDEVEG 73
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
R13G10.1 protein.
Length = 1469
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 55 LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 198
L C+S + PHR+ E ++ + D V + N+I +L + D RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 55 LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 198
L C+S + PHR+ E ++ + D V + N+I +L + D RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/78 (23%), Positives = 28/78 (35%)
Frame = -2
Query: 533 TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAETTDAET 354
T P A P L + + + + + +PP + R K +PSA DA
Sbjct: 82 TDPDKRAIPSLLDIRTHKPQMKDLGPQVIYPNRAPPNPSSSQNRFKRDSAPSAPARDAPM 141
Query: 353 LGTARTKLSRVPT*LTRR 300
+ P +TRR
Sbjct: 142 FRGRTISQRQAPPQITRR 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,292,528
Number of Sequences: 27780
Number of extensions: 229713
Number of successful extensions: 666
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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