Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c12r
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    28   1.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.5  

>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 219 NDFVSYVENSQKIYFY--TFTVSLILIINNQINTYVHVWHQ 335
           + F+SY  +  K++FY     + LI I N +I++  HV  Q
Sbjct: 68  DQFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQ 108


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 264  YTFTVSLILIINNQINTYVHVWHQS*VLTQTHTL 365
            Y FT S I ++ N   TY     ++ V+ QTHT+
Sbjct: 1043 YKFTTSKISLVKNPTKTYTVTDVETNVVVQTHTV 1076


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,583
Number of Sequences: 5004
Number of extensions: 52827
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)