Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c12r
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989...    28   8.5  
03_02_0986 - 12976344-12976679,12977962-12978081,12978414-129787...    28   8.5  

>04_03_1048 -
           21998214-21998413,21998507-21998674,21998758-21998977,
           21999571-21999761,21999869-21999962,22000257-22000500,
           22001314-22001411,22001509-22001600,22001695-22001809,
           22001890-22002036,22003031-22003255
          Length = 597

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 716 FTSISSNFR*YVLLILINDLNFYNIKYYQHQTYAS 820
           + +I+  +  YVLL L+   + Y++KY +H+++ S
Sbjct: 428 YDAIAMKYLTYVLLFLVFCFSIYSLKYEKHKSWYS 462


>03_02_0986 -
           12976344-12976679,12977962-12978081,12978414-12978786,
           12978934-12978970,12979160-12979196
          Length = 300

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 229 TKSFQLYFQGICLIILXLYFYFASIVSLRAAFKISVLGVLTQFXP*YVYIMY 74
           T+SFQ     + L+   L+ Y+A + S      I+ +G L +     VY++Y
Sbjct: 37  TESFQSVPYAVALLSAMLWLYYALLTSDLLLLSINSIGCLVESLYLTVYLLY 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,567,988
Number of Sequences: 37544
Number of extensions: 238586
Number of successful extensions: 333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)