Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c12r
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   6.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 593 YPFYNTNKNRIT*VILKLQLLRIWDE*KSHDIHIM*QLNF 712
           Y   +T    +T V++ + L+ +W E  S +  I+  LNF
Sbjct: 243 YSMNSTTYVTLTIVLMTMTLMTLWLEPSSTERMIIANLNF 282


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 777 FKSLINIRSTYYRK-LLEIDVKKKFSCYII*ISCDFYSSHILRS 649
           FK  I ++     + + E ++KK  + Y   I+C    SHI+++
Sbjct: 48  FKDFIKMQELLQEEDISEGNIKKYLTNYSCFITCALEKSHIIQN 91


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = +3

Query: 237 VENSQKIYFYTFTVSLILIINNQINTYVHV 326
           +EN  K+  + F ++ ++++ + + T VH+
Sbjct: 732 IENRAKLTDFGFCITEVMMLGSIVGTPVHM 761


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = +3

Query: 237 VENSQKIYFYTFTVSLILIINNQINTYVHV 326
           +EN  K+  + F ++ ++++ + + T VH+
Sbjct: 770 IENRAKLTDFGFCITEVMMLGSIVGTPVHM 799


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,271
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)