Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c09r
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    33   0.043
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   3.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   4.9  

>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 33.5 bits (73), Expect = 0.043
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 134 ADLRGVRGRAGSEKSTSYKPKRSLWNTKCLIYIYFSSKKVLISIKSNSLRFY 289
           A+L  V+  +  E+S++YK  +     K L+Y Y   K+ L++  SNSL  Y
Sbjct: 4   ANLHYVKESSNLERSSTYKSSKIQDEAKQLLYDYVYIKEKLLTTSSNSLTHY 55


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 222 KHFVFHSERFGLYEVDFSDPARPRTPRKSAFVYKEILRSRVIDHDYEP-DTTVMTIDEGH 46
           K+   H E +  +E+DF    R  TP+++     + + +++ ++DY   DT      E H
Sbjct: 293 KYHALHKEVYDWFEIDFDHFGRTTTPKQTGIA--QHIFTKLYNNDYMAIDTMTQLYCEVH 350


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 310  QISIPKLYYCLQLTNKLPATNCTKSLGLKLKPLYY 414
            +I  P+LY  + L   +  TN TKS     + LYY
Sbjct: 2015 KIMTPELYKIIDLIRDMMVTNHTKSTRQTCRHLYY 2049


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,775,784
Number of Sequences: 5004
Number of extensions: 79645
Number of successful extensions: 195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)