Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c09r
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...    54   2e-07
U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...    47   2e-05
AF077537-1|AAC26273.2|  111|Caenorhabditis elegans Hypothetical ...    34   0.12 
Z82053-10|CAB04838.2|  278|Caenorhabditis elegans Hypothetical p...    30   2.0  

>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = -3

Query: 876 HISRTNTNDPIFYVTENGW----ATSPEVGLEDDDRITYYRAALENILDSLDAGVRLKGY 709
           ++     N P+F +TENG         E    D  RI Y    LE +  +LD G  + GY
Sbjct: 362 YVKEKYANTPVF-ITENGCMDIVGQDQEDAFHDQHRIDYISGHLEAVAKALDEGCNVIGY 420

Query: 708 MAWSLMDNYEWMAGY 664
             W+LMDN+EW  G+
Sbjct: 421 TVWTLMDNFEWDDGF 435



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = -3

Query: 198 RFGLYEVDFSDPARPRTPRKSAFVYKEILR 109
           +FGL EVDF  P + RT +KSA+ YKE ++
Sbjct: 438 KFGLCEVDFESPDKTRTMKKSAYFYKEFIK 467


>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = -3

Query: 855 NDPIFYVTENGW-------ATSPEVGLEDDDRITYYRAALENILDSLDAGVRLKGYMAWS 697
           N P+F +TENG            E  L+D  RI +    LE +  +L+ G  + GY  W+
Sbjct: 369 NIPVF-ITENGCMDLVGGEGRKEEEILDDKHRIKFISGHLEAVAKALEEGCNVIGYTLWT 427

Query: 696 LMDNYEWMAGY 664
           LMDN+EW  G+
Sbjct: 428 LMDNFEWDDGF 438



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 198 RFGLYEVDFSDPARPRTPRKSAFVYKEILR 109
           +FG+  VDF  P + RT + SA  Y+  +R
Sbjct: 441 KFGICRVDFDSPDKTRTMKYSAKYYQTFIR 470


>AF077537-1|AAC26273.2|  111|Caenorhabditis elegans Hypothetical
           protein F16G10.5 protein.
          Length = 111

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -2

Query: 223 QTFCVPQRTFRFVRG*LFGSRPPSHPAQVRVRLQGDLEEQGHRPRLRAR 77
           Q  CV  R  R+VRG      PP  P + R RLQ  ++ +    R+R+R
Sbjct: 23  QALCVGWREGRWVRGAREDREPPPPPRRPRTRLQVRVDREAAEARMRSR 71


>Z82053-10|CAB04838.2|  278|Caenorhabditis elegans Hypothetical
           protein T26E3.8 protein.
          Length = 278

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -2

Query: 475 VMYIFKCIRIYKYNIPIS 422
           + YIFKC+++Y+Y+I ++
Sbjct: 95  ISYIFKCVKVYRYDIEVN 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,765,634
Number of Sequences: 27780
Number of extensions: 436766
Number of successful extensions: 1101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)