Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c09r
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.73 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   6.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   9.0  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 771 YRAALENILDSLDAGVRLKGYMAW 700
           +R  L   LDS   GV LKG+  W
Sbjct: 490 FRQRLRKELDSKTGGVNLKGHAHW 513



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 500 INLFVIRMFAGFIPAIT 550
           +  F++R    FIPA+T
Sbjct: 442 VTYFIVRALKPFIPAVT 458


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 6/14 (42%), Positives = 13/14 (92%)
 Frame = -3

Query: 627 SSSYIYITFNGIVN 586
           +++Y+Y+T+NG V+
Sbjct: 358 TTNYLYLTYNGTVH 371


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 160 PPSHPAQVRVRLQGDLEEQGHRP 92
           PP+ PA++R   + + E   +RP
Sbjct: 25  PPTRPARLRREAKPEAEPGNNRP 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,008
Number of Sequences: 438
Number of extensions: 5624
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)