Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c09f
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-3|CAB04215.3|  315|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical...    28   6.1  

>Z81518-3|CAB04215.3|  315|Caenorhabditis elegans Hypothetical
           protein F28D9.2b protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 104 ICLFSMLFALPKKKKLRNSTAFFKVLFSLIYIKTLPTVILVLFFK 238
           +C + + F  PK+ K R   A+F+V     +   LP+++L   ++
Sbjct: 33  LCFYFVWFYTPKESKFRYCLAYFQVFGYFKFSFELPSLLLCFIYR 77


>AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical
           protein C24H12.11 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 251 DFYLLVHSKADAPNVIPFKYHQDLSSSF*VILNNASLID 367
           +FY   + K     VIPFK  Q+L+     ILNN+ LID
Sbjct: 133 NFYCTNYKKVSKFPVIPFKTSQELTHLL-DILNNSFLID 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,038,352
Number of Sequences: 27780
Number of extensions: 298575
Number of successful extensions: 681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)