Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c08r
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      53   4e-08
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    26   7.6  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = -3

Query: 832 PGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGG-QFKMMENITNFQSAIKAYGVPDID 656
           P   FE  L++G VL  L+ K +P  + KI  +   QF+  +NI  F   I   G+P+I 
Sbjct: 61  PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIF 120

Query: 655 VFQTVDLWEKKDIAQVVSTLFAL 587
            F+  D++E K++ +V+  + AL
Sbjct: 121 HFELTDIYEGKNLPKVIYCIHAL 143


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 15  IQNLLSLCTNSYQALLNF 68
           I N++++C+NSY  L+N+
Sbjct: 95  ILNIVTICSNSYSILVNY 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,418,370
Number of Sequences: 5004
Number of extensions: 73476
Number of successful extensions: 173
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)