Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1c05r
(903 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 42 9e-05
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 30 0.52
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 29 0.90
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.90
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 29 1.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 2.8
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 6.4
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 26 6.4
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 6.4
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 26 8.4
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 42.3 bits (95), Expect = 9e-05
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Frame = -3
Query: 445 SRDPERTPFHWNPEKNAGFSTAD-KTWLPMAEGYETLNVEVQKASERSHLKVYKALSDLR 269
+RD RTP HW+ N GF+ A K W+ + Y+ N Q S + +LR
Sbjct: 435 ARDNGRTPMHWDSSPNGGFTKAGVKPWMRVTNDYKEWNAANQVNDPESPYTFWSKALELR 494
Query: 268 QE--NTFRYGRYESLA-LNQDIFVFKRWLNDVIYLVVVN 161
+E + YG +E ++ + I F R + ++++N
Sbjct: 495 KELKDAVVYGSFELISEEDPSIVAFVRESSTYKLIILLN 533
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 29.9 bits (64), Expect = 0.52
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 406 EKNAGFSTADKTWLPMAEGYETLNVEVQKASERSHLKVYKALSDLRQENTFRYG 245
E N +++ K W+P EGY E A+ +SH+ + ++L ENT G
Sbjct: 432 EINTMYASNLKPWMPHPEGYREFGREQNNATLKSHIGLNGETTEL-IENTDNQG 484
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 29.1 bits (62), Expect = 0.90
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 652 VGNHDNSRM-ATRYG-ASLVDGINMLVLLLPGVAVTYMGEEIGL 527
V NHD R A G A L+ G + LL PG+ + Y G+E G+
Sbjct: 459 VANHDVFRWGAIENGTARLILGTMITSLLFPGIPLLYYGDEQGM 502
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.1 bits (62), Expect = 0.90
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 741 TSVIKSKLNGICAPFKSPSPKYLTTSWIDAYTSVIIALVSPSIALNSSKD 890
+S ++ + G+C+ P K +DA+TS++I L+S S S K+
Sbjct: 4 SSWTEADILGVCSFLDIPKTKIDPLLQVDAFTSILIPLISKSKDYESIKN 53
>SPAC23H4.08 |||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 444 REIPKGLLSIGTPRKTLDSLPLTR 373
RE KG+LS +PR T+ +LP T+
Sbjct: 112 RENTKGILSFSSPRYTIQNLPSTQ 135
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 652 VGNHDNSRMATRYGAS--LVDGINMLVLLLPGVAVTYMGEEIGL 527
V N+D R A+ S L+ G M L PG + Y G+E GL
Sbjct: 452 VSNYDVFRWASVADGSRRLILGTMMTFFLFPGAPLIYYGDEQGL 495
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 26.2 bits (55), Expect = 6.4
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 18 SNPTTGRDFASNVSPSFLGELTLLIDTATFPETFSKYVRSMLCSTSRIF--TTTR*MTSL 191
SNPT+ F+S + SF G ++ + FP ++ + S S + I+ T ++
Sbjct: 106 SNPTSLEIFSSQ-NTSFFGNISAIFCDDKFPYAYATFTFSDKPSFTSIYRWNVTNSNVTI 164
Query: 192 SHLLNTK 212
H N K
Sbjct: 165 EHFYNVK 171
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 417 WKGVLSGSLDDSTYFIGSLVLHP 485
W S SLDD+T+ +GS V +P
Sbjct: 179 WIHSASASLDDNTHNLGSFVTNP 201
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 451 ESSRDPERTPFHWNPEKNAGFSTA 380
+S DP ++ FHW P+ + F+ A
Sbjct: 343 QSLSDPIKSRFHWYPKSSTRFAVA 366
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 25.8 bits (54), Expect = 8.4
Identities = 8/37 (21%), Positives = 20/37 (54%)
Frame = +3
Query: 792 PSPKYLTTSWIDAYTSVIIALVSPSIALNSSKDISPL 902
P P+++ + +++ ++PS++ N S SP+
Sbjct: 701 PIPRFIVCDQGGSQARFLLSRINPSVSFNKSSQFSPM 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,889,188
Number of Sequences: 5004
Number of extensions: 85246
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -