Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1c05r
(903 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128... 29 5.1
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 29 6.7
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 29 6.7
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 29 6.7
09_04_0457 - 17736158-17737336 28 8.8
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 8.8
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665... 28 8.8
03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569... 28 8.8
>04_01_0123 -
1283197-1283292,1283330-1284439,1284790-1285177,
1285523-1287609
Length = 1226
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 699 STALFISAADELASTSVIKSKLNGICAPFKSPSPKYLTTSWIDAYTSVI 845
ST L+ + AD+ A + + + L G + P Y +SW D + +
Sbjct: 464 STVLYAAGADDNALANYLPTALKGYARSWLMHLPPYSISSWADLWQQFV 512
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 699 STALFISAADELASTSVIKSKLNGICAPFKSPSPKYLTTSWIDAYTSVI 845
ST L+ + AD+ A + + + L G + P Y +SW D + +
Sbjct: 214 STVLYAAGADDNALANYLPTALKGSARSWLMHLPPYSISSWADLWQQFV 262
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 28.7 bits (61), Expect = 6.7
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Frame = -3
Query: 580 VLLLPGVAVTYMGEEIGLEDGYVSWEDTVDPSGCNT---NDPIKYVESSRDPERTPFHWN 410
+LLLPG + Y+G L V+ P GC T + I Y DP+R ++
Sbjct: 6 LLLLPGCLLLYLGAIATLAAADVAIPAGGQPPGCRTRCGDVDIPYPFGIIDPDRPDCAYS 65
Query: 409 PEKNAGFSTADKTWLPMAEGYETLNVEV 326
++ + PM E N+ V
Sbjct: 66 RGFQLNCTSVNGAARPMFHNIEVTNISV 93
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 490 PSGCNTNDPIKYVESSRDPERTPFHWNPEKNAGFSTADKT 371
PSG N K+V+ S P + P H PE ++D+T
Sbjct: 1070 PSGPQHNTLFKWVKESAGPSQGPQHKYPELPGQLKSSDQT 1109
>09_04_0457 - 17736158-17737336
Length = 392
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +3
Query: 6 QTSPSNPTTGRDFASNVSPSFLGELTLLIDTATFPETFSKYVR 134
Q S NP G +A+N SPS + +LI F FS YVR
Sbjct: 28 QPSQDNPPAGY-YATNFSPSMAIVIVVLIAAFFFLGFFSIYVR 69
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -3
Query: 811 VRYFGEGDLKGAQIPFNFDLITDVDASSSAADIKRAVDKFLTYKPVDQTANWVVGNHDNS 632
VRY + +Q+ D + D+D ++ + + V V+GNHD+S
Sbjct: 529 VRYSASRRPRMSQVVRALDSLADIDLTNGVQPGQSELFNVANTAEVRMFQRMVLGNHDDS 588
Query: 631 RMATRYGAS 605
++YG S
Sbjct: 589 SDMSQYGWS 597
>04_01_0508 +
6647812-6647820,6647864-6648226,6649351-6650673,
6653569-6653766,6654485-6654568,6655175-6655920,
6656480-6657341
Length = 1194
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 690 KNLSTALFISAADELASTSVIKSKLNGICAPFKSP 794
+NL T FIS +++ S V+ ++++ IC+ +SP
Sbjct: 729 RNLITEAFISCMNKITSIIVLGTEVDMICSSSRSP 763
>03_05_0915 +
28755584-28756139,28756695-28756846,28756994-28756996,
28757587-28757690,28758033-28758121,28758682-28758825,
28759194-28759291,28759380-28759502,28760045-28760113,
28760206-28760406
Length = 512
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/64 (28%), Positives = 24/64 (37%)
Frame = -3
Query: 565 GVAVTYMGEEIGLEDGYVSWEDTVDPSGCNTNDPIKYVESSRDPERTPFHWNPEKNAGFS 386
GV V + VS ED S C ++ ++ PE P W PE N G
Sbjct: 106 GVGVELRQRSVSGSGRVVSREDAT--SSCGSSARESAAAAAAVPEAAPAAWRPEANGGGK 163
Query: 385 TADK 374
+K
Sbjct: 164 KLEK 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,320,714
Number of Sequences: 37544
Number of extensions: 517825
Number of successful extensions: 1225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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