Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c04r
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    54   9e-09
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   2.6  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    25   3.4  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   4.5  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   4.5  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   4.5  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    24   7.9  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   7.9  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    24   7.9  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 53.6 bits (123), Expect = 9e-09
 Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
 Frame = -2

Query: 286 LDEQFKQVADKVRNWKTKPSDDEXLALXSLFKQATIGDVNIAQPSGLVE---SAKWXAWN 116
           +   F+Q A  V+  K  P+ DE L L +LFKQAT+GD N  +P GL++     KW AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNNTEKP-GLLDLKGKFKWNAWE 59

Query: 115 GRKGISXD 92
             KG S +
Sbjct: 60  ELKGKSKE 67


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 111 RPFHAXHLALSTRPLGWAMLTSPMV 185
           + FHA  L L +RP G+ +  +P++
Sbjct: 302 KKFHAVRLTLRSRPAGFGLRCNPIL 326


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 175 DVNIAQPSGLVESAKWXAW 119
           D+N A+   +VESAKW  +
Sbjct: 159 DINTAEQERVVESAKWFTY 177


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 325 TLPPDLKR*HKMSLDEQFKQVADKVRNWKTKPSDDEXL 212
           T PP ++   K  LD   K++ D+    + +PS D  L
Sbjct: 360 TQPPSMRNDWKDYLDNNSKEILDQFGFLQKRPSHDTPL 397


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 28  IIYAXLEWSFSAFSDVLLLGIDXGRCLCDRSMP 126
           ++Y   EW     S ++L+GI     + DR +P
Sbjct: 298 VLYTLFEWPSRPTSRLILVGIANALDMTDRFLP 330


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 250 RNWKTKPSDDEXLALXSLFKQATIGDVNIAQPSG 149
           RNW+T   DD  LA   + K++   +++ ++  G
Sbjct: 531 RNWQTTVFDDSDLATMGVNKESLSNEMDYSKSLG 564


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 167 HCPAQRSCGERQVXGMERSQRHL 99
           +CPAQR  G   V G   S+R +
Sbjct: 486 YCPAQREYGRLNVVGTLMSKRKI 508


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 61   AFSDVLLLGIDXGRCLCDRSMP 126
            +F D+LL GID GR   DR +P
Sbjct: 988  SFKDLLLEGIDSGR--IDRVLP 1007


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 83  LASIXGDAFATVPCLPLGALHKTAGLGNVNITYGSLLEQGXQRKXLIVTGLGLPV 247
           +A   G   ++ P LPL A++ TAG  +    +  + E+    K  I+    +P+
Sbjct: 160 IADYEGVDKSSKPQLPLIAINTTAGTASEMTRFAIITEETRHIKMAIIDKHTMPI 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,642
Number of Sequences: 5004
Number of extensions: 25050
Number of successful extensions: 63
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)