Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1c04r
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369... 58 3e-09
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847... 58 3e-09
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86... 50 7e-07
03_06_0582 - 34891613-34891795,34892407-34892466,34893134-348932... 38 0.003
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468... 29 0.79
04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455 29 1.4
01_06_0579 + 30379243-30379617 28 1.8
12_01_0404 + 3200787-3200898,3201016-3201091,3201442-3201544,320... 27 3.2
07_01_0703 - 5295561-5297523,5299344-5299462 27 3.2
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 27 5.6
01_05_0666 + 24132641-24132768,24134854-24134860,24135042-241352... 26 7.4
09_04_0306 + 16555664-16556623 26 9.8
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 26 9.8
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 26 9.8
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841 26 9.8
>08_01_0417 -
3692247-3692329,3692442-3692504,3693233-3693350,
3694084-3694095
Length = 91
Score = 57.6 bits (133), Expect = 3e-09
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = -2
Query: 292 MSLDEQFKQVADKVRNWKTKPSDDEXLALXSLFKQATIGDVNIAQPSGLV--ESAKWXAW 119
M L E F+Q A+K + S++ L L L+KQAT+GDVN A+P + AKW AW
Sbjct: 1 MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTARPGIFAQRDRAKWDAW 60
Query: 118 NGRKGISXDRCQEAIHPKMRR 56
+G S + K+++
Sbjct: 61 KAVEGKSKEEAMSDYITKVKQ 81
>03_05_0107 -
20883353-20883627,20883739-20883801,20884608-20884725,
20885012-20885023
Length = 155
Score = 57.6 bits (133), Expect = 3e-09
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = -2
Query: 292 MSLDEQFKQVADKVRNWKTKPSDDEXLALXSLFKQATIGDVNIAQPSGLV--ESAKWXAW 119
M L E F++ A+KV+ S+++ L L L+KQAT+GDVN ++P + AKW AW
Sbjct: 1 MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVNTSRPGIFAQRDRAKWDAW 60
Query: 118 NGRKGISXDRCQEAIHPKMRR 56
+G S + K+++
Sbjct: 61 KAVEGKSKEEAMSDYITKVKQ 81
>06_01_0108 -
860080-860162,860276-860338,860857-860974,861481-861492
Length = 91
Score = 49.6 bits (113), Expect = 7e-07
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = -2
Query: 292 MSLDEQFKQVADKVRNWKTKPSDDEXLALXSLFKQATIGDVNIAQPS--GLVESAKWXAW 119
M L E+F++ A+K + S+++ L L L+KQAT+G V +P L + KW AW
Sbjct: 1 MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVTTGRPGIFNLKDRYKWDAW 60
Query: 118 NGRKGISXDRCQEAIHPKMRR 56
+G S + K+++
Sbjct: 61 KAVEGKSKEEAMADYITKVKQ 81
>03_06_0582 -
34891613-34891795,34892407-34892466,34893134-34893280,
34893502-34893657,34893745-34893828,34893907-34893995,
34894575-34894689,34894776-34894899,34895080-34895219,
34895868-34895929,34896042-34896108,34896185-34896295,
34896868-34896945,34897074-34897274,34897492-34897563,
34897630-34897693,34898084-34898154,34898328-34898474
Length = 656
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -2
Query: 226 DDEXLALXSLFKQATIGDVNIAQPSGL--VESAKWXAWNG 113
+D L L L++QAT+G N+ +P VE +KW +W+G
Sbjct: 37 NDVALLLYGLYQQATVGPCNVPKPRAWNPVEQSKWTSWHG 76
>04_04_1623 -
34846056-34846223,34846547-34846644,34846738-34846829,
34847096-34847202,34847385-34847490,34848108-34848547
Length = 336
Score = 29.5 bits (63), Expect = 0.79
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -2
Query: 238 TKPSDDEXLALXSLFKQATIGDVNIAQPSG--LVESAKWXAWN 116
T + L L L+K AT G QPS L AKW AW+
Sbjct: 109 TSVPEQAQLQLYGLYKIATEGPCTAPQPSALKLKARAKWNAWH 151
>04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455
Length = 300
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 351 TVPIGTLXLPYLLISKDNT-KCLXTSNSNRSPIRLGTGRPSP 229
++ L + +L+IS NT K L + S+ SP +LG G P P
Sbjct: 114 SISASLLGIIFLIISLRNTNKGLTSLQSSSSPTKLGDGLPLP 155
>01_06_0579 + 30379243-30379617
Length = 124
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 112 RKGISXDRCQEAIHPKMRRNSTPN 41
R+G DRC + H MRR+S+P+
Sbjct: 3 RRGDGWDRCTISCHSPMRRSSSPH 26
>12_01_0404 +
3200787-3200898,3201016-3201091,3201442-3201544,
3202109-3202160,3202239-3202333,3202703-3202768,
3202910-3203419,3203598-3203756,3204022-3204321,
3204867-3205193,3205548-3205754,3205978-3206076,
3206193-3206251,3206294-3206639
Length = 836
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 53 VSPHFRMYCFLASIXGDAFATVPCLPLGALHKTAGLGNVNITYGSLLEQGXQRKXLI 223
+S HF +C+ S AT+P + L LH+ + ++ L++Q + K ++
Sbjct: 623 LSAHFAQWCYHVSFP--EVATIPLILLKRLHEQTTIESLRRPIKRLIDQVDENKNIV 677
>07_01_0703 - 5295561-5297523,5299344-5299462
Length = 693
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 198 REXSARXSSSLGLVFQFLTLSAT--CLNCSSRDILCYLLRSGGR 323
RE A+ + +G + Q L+ C NCS +L L +S GR
Sbjct: 455 REDDAQLAEEIGDLVQLRVLNVVLNCSNCSEAKVLTELAKSMGR 498
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 352 DSTNWNLAXTLPPDLKR*HKMSLDEQ 275
DS NWNL+ PP +K +M L+E+
Sbjct: 1756 DSPNWNLSFGCPPIIK--EEMKLNEE 1779
>01_05_0666 +
24132641-24132768,24134854-24134860,24135042-24135230,
24136017-24136185,24136299-24136744,24137540-24137563,
24137736-24137828,24138806-24138884,24138979-24139063,
24139479-24139788,24140471-24140614
Length = 557
Score = 26.2 bits (55), Expect = 7.4
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 149 SCGERQVXGMERSQRHLPXSMPRSNTSEN 63
SC +++V G+++ ++P +P+S E+
Sbjct: 178 SCSDQEVHGVDQKMLNVPVPLPQSTVMED 206
>09_04_0306 + 16555664-16556623
Length = 319
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 165 LPSPAVLWRAPSGRHGTVAKASPXIDAKKQ 76
+P+ A LWR P+ A A+P ++Q
Sbjct: 210 VPAAAALWRVPAAAIAVAAAAAPLARQERQ 239
>03_05_0440 +
24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2
Query: 223 DEXLALXSLFKQATIGDVNIAQPSGLVES 137
DE AL +L A + VNI QPS +VES
Sbjct: 476 DESSALDALHTLADLS-VNILQPSSIVES 503
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 77 CFLASIXGDAFATVPCLPLGALHKTAGLGNV-NITYGSLLEQG 202
C L + +AF P L L LHK + + NI + + + G
Sbjct: 728 CLLVQVIANAFYYNPSLTLATLHKLGAVTEIFNIWFEQVKKSG 770
>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
Length = 534
Score = 25.8 bits (54), Expect = 9.8
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +3
Query: 108 LRPFHAXHLALSTRPLGWAMLTSPMVACLNREXSARXSSSLGLVFQFLTLSATCLNCSSR 287
LR +A+ R L + + SP++ CL S R L L L C+ C +
Sbjct: 230 LRELGLYCVAMEDRDLDFVLANSPVLECLGIYYSQRQIVLLRLASHSLRCVQICM-CIAE 288
Query: 288 DI 293
DI
Sbjct: 289 DI 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,774,204
Number of Sequences: 37544
Number of extensions: 191748
Number of successful extensions: 543
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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