Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1c01f
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical ...    28   4.5  
AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical
           protein C49H3.6b protein.
          Length = 498

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -3

Query: 333 KPTPPPVRRTLANCVDPRTRTALTRLPAGAVNLTLTTRELIVAARLTTKLRKSLSLEV-I 157
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 156 LPIL--KALALSVDLGSATSLVDTATIAVNTN 67
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


>U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical
           protein C49H3.6a protein.
          Length = 552

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -3

Query: 333 KPTPPPVRRTLANCVDPRTRTALTRLPAGAVNLTLTTRELIVAARLTTKLRKSLSLEV-I 157
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 156 LPIL--KALALSVDLGSATSLVDTATIAVNTN 67
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


>Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical
           protein C05B5.2 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 448 FLFFRLHKKFVLPIFLINNSRIYFEASLFFFSDCKLLWQH 567
           FLFF   + F++P F+   +  Y    LF      +LW H
Sbjct: 213 FLFFIAFRAFIIPKFIFLETGSYVATGLFSAFHLTILWIH 252


>Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.2 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 490 FLINNSRIYFEASLF---FFSDCKLLWQHYKLISK*KSRLP 603
           +L N+  ++F  S+    FF DCK  W  YK  S  + RLP
Sbjct: 22  YLCNSCDLFFRRSMTPWSFFGDCKHNWDCYKESSN-RQRLP 61


>AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical
           protein Y9C9A.8 protein.
          Length = 666

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 388 RTNLGTLKCIFWTFTCKYTKFLFFRLHKKFVLPIFLINNSRIYFEASLFF 537
           +  +GT+ C+    T     FLFF +   F  P+F IN  +  F  + F+
Sbjct: 165 KNTIGTI-CLGSIMTAIPMIFLFFPIGALFTAPVFGINMEKFSFLVTFFY 213


>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -3

Query: 225 TRELIVAARLTTKLRKSLSLEVILPILKALALSVDLGSATSLVDTATIAVNTNNRANFIL 46
           TR+L +  +L  +  K+  L +   ILK   L   LG+A  LV+  T  ++  NR +  L
Sbjct: 792 TRDLRLDIKLRNRFLKAEQLLIKNGILKTEILENLLGTALYLVENVTAWMHMTNRKDKSL 851

Query: 45  QE 40
           ++
Sbjct: 852 KD 853


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,964,837
Number of Sequences: 27780
Number of extensions: 231821
Number of successful extensions: 605
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)