Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b23r
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe...    39   8e-04
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    27   2.5  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   5.8  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    26   7.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   7.6  
SPCC777.17c |||mitochondrial ribosomal protein subunit L9 |Schiz...    26   7.6  

>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 104

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -2

Query: 787 HPILHTD---ECNIFIKKLVDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQKANLDE 617
           HP L  +   +C   I+ L +CH +  F KF G CN    +++ CL  +R  + + N + 
Sbjct: 2   HPHLDVNNQKQCADLIRALEECHKS--FGKFFGECNTIKYELKACLTKDRNDKARLNREN 59

Query: 616 SRQR 605
           +R R
Sbjct: 60  ARMR 63


>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = -1

Query: 197 SDESVFEVPCCMKGTLVEVNEELVQNPLLLKNMPDSDGFIAIMLASIAISEATKSELLTH 18
           S +S  +V   + GT+  +NE L  +P  + + P+ +G+I  +   ++  +  KS LL  
Sbjct: 99  SVKSASDVYSPVSGTVTSINESLGDSPDKVSSSPEEEGWICKI--KLSSPDELKS-LLND 155

Query: 17  EEY 9
           E Y
Sbjct: 156 ESY 158


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 751 IKKLVDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQK 632
           ++  +D  ++HP+ K  GY +   RD R   KAE   R++
Sbjct: 266 LRPSIDQIISHPYFKENGYHSSSIRDPRPSSKAEEKVRKR 305


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 494 LDSIPDLDNLK-TFTERYFSKRYLINVDGIKNNDMMIMFHSNRIALLSLAPSHSFFSKD- 321
           L S P +D  K +  +RY     L  +D ++   +++ +    IA+  + P H +  +D 
Sbjct: 62  LVSHPSIDKGKLSILKRYKMSHRLTAIDKLRPLTVLVAWKQLNIAMRPIFPQHRYTEQDK 121

Query: 320 ENYK 309
           +N+K
Sbjct: 122 KNWK 125


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 83  IHQNLACFSATM-DSVQVLH*LQPKYLSCNRALQIRFHR 196
           IHQ +   + T  D    L  L  KYLSC+  + I+ H+
Sbjct: 276 IHQVINTLAQTKWDETAALSILSQKYLSCDLGIPIQEHK 314


>SPCC777.17c |||mitochondrial ribosomal protein subunit L9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 732 QSTNFLIKILHSSVCKMG*QIRVHNLNKFYY 824
           Q   FL+K+L++ V K+G Q  V ++ + YY
Sbjct: 36  QPKPFLVKLLNNEVSKLGRQGDVVSVTRGYY 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,273,326
Number of Sequences: 5004
Number of extensions: 65532
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)