Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b23r
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-10|AAM22045.1|  102|Caenorhabditis elegans Hypothetical p...    52   7e-07
L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical pr...    44   2e-04
Z82268-1|CAB05197.3|  508|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical ...    28   9.5  

>U21324-10|AAM22045.1|  102|Caenorhabditis elegans Hypothetical
           protein C35D10.17 protein.
          Length = 102

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/53 (43%), Positives = 31/53 (58%)
 Frame = -2

Query: 784 PILHTDECNIFIKKLVDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQKAN 626
           P LHT ECN+ I+ L  CH   P  K IG C+ +D  + +C K ER+ R+  N
Sbjct: 7   PHLHTKECNMLIEFLQRCHSEKPIGKMIGKCSYWDEAVWQCTKKERIWRRDNN 59


>L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical
           protein F54F2.7 protein.
          Length = 157

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 25/80 (31%), Positives = 36/80 (45%)
 Frame = -1

Query: 284 DRLNNSVXXXXXXXXXXXXXXSVICKIEFSDESVFEVPCCMKGTLVEVNEELVQNPLLLK 105
           DR  N V              S +C  +  D S   V   ++GTLVE+N+ L   P  ++
Sbjct: 61  DRSTNQVSGKGKKGALILQPDSKLCTFKCKDGSEHVVRAGVRGTLVEMNDRLKTTPDFIR 120

Query: 104 NMPDSDGFIAIMLASIAISE 45
             PD+ GFIAI+     + E
Sbjct: 121 TAPDNQGFIAIITYGAGVRE 140


>Z82268-1|CAB05197.3|  508|Caenorhabditis elegans Hypothetical
           protein F52B11.1a protein.
          Length = 508

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 676 DMRKCLKAERLQRQKANLDESRQRHANIRARILAQSA 566
           DMRKC  A+RL  +K      RQ   N++A I+A++A
Sbjct: 42  DMRKCFSAKRLYNEKV----KRQTDENLKA-IMAKTA 73


>AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical
           protein C11D9.1 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -1

Query: 218 VICKIEFSDESVFEVPCCMKGTLVEVNEELVQNPLLLKNMPDS 90
           ++ K+E +  S  E  C  +  +++  + +VQ PLLLKN+ D+
Sbjct: 328 LLSKLE-AVNSTREQHCSWESRMIKPVQRIVQYPLLLKNIADA 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,766,618
Number of Sequences: 27780
Number of extensions: 357389
Number of successful extensions: 870
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)