Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b23r
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               26   0.37 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.6  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   6.1  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 739 VDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQR 638
           +D  L    RK I  C D  ++  KCL A++  R
Sbjct: 86  MDMDLKDSIRKIIRQCVDNAKNEDKCLTAQKFSR 119


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 638  PLKSFSFQTFPH 673
            P K+  FQTFPH
Sbjct: 1739 PSKAMQFQTFPH 1750


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 91  ESGMFFSNNGFCTSSSLTSTK 153
           +S M F NN  CTS++ +  K
Sbjct: 623 DSNMGFLNNSMCTSTTTSPDK 643


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 117 WILYKFFINFNQSTFH 164
           W+   FF+N  QS FH
Sbjct: 94  WVPDTFFVNEKQSYFH 109


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 117 WILYKFFINFNQSTFH 164
           W+   FF+N  QS FH
Sbjct: 94  WVPDTFFVNEKQSYFH 109


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 117 WILYKFFINFNQSTFH 164
           W+   FF+N  QS FH
Sbjct: 33  WVPDTFFVNEKQSYFH 48


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 484 IESRML-KSIVFIITKLCFLI*IYISWLLRSGLKFVLEYWRG 606
           +E  M+ K ++ + TK  FL+ ++  +     L FV+EY  G
Sbjct: 28  VECTMVEKRVLALSTKPPFLVQLHSCFQTMDRLYFVMEYVNG 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,334
Number of Sequences: 438
Number of extensions: 4257
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)