Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b23f
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               26   0.31 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   5.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.9  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 241 VDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQR 342
           +D  L    RK I  C D  ++  KCL A++  R
Sbjct: 86  MDMDLKDSIRKIIRQCVDNAKNEDKCLTAQKFSR 119


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 342  PLKSFSFQTFPH 307
            P K+  FQTFPH
Sbjct: 1739 PSKAMQFQTFPH 1750


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 186  GFVTPFTHR 212
            GFVTPF HR
Sbjct: 981  GFVTPFEHR 989


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 150 IKYNKTYLSYAHGFVTPFTHR 212
           I  N   LS A  F+TPF +R
Sbjct: 256 ISRNGVRLSSARAFITPFENR 276


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 496 IESRML-KSIVFIITKLCFLI*IYISWLLRSGLKFVLEYWRG 374
           +E  M+ K ++ + TK  FL+ ++  +     L FV+EY  G
Sbjct: 28  VECTMVEKRVLALSTKPPFLVQLHSCFQTMDRLYFVMEYVNG 69


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 507 DNLKTFTERYFSKRYLINVDGI 572
           +N   + ++ + K Y+IN++ I
Sbjct: 95  NNYNNYNKKLYYKNYIINIEQI 116


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 570 IKNNDMMIMFHS 605
           I+NND ++ FHS
Sbjct: 256 IRNNDRILYFHS 267


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 130 YKFNS*RNYAIVTFCYIIP 74
           Y+F+  R+Y I+   Y+IP
Sbjct: 244 YEFSISRHYGILHATYVIP 262


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 507 DNLKTFTERYFSKRYLINVDGI 572
           +N   + ++ + K Y+IN++ I
Sbjct: 336 NNYNNYNKKLYYKNYIINIEQI 357


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 316 CLKAERLQRQKANLDE 363
           CLK E  +R+K +LD+
Sbjct: 117 CLKFEEQKRRKKSLDD 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,524
Number of Sequences: 438
Number of extensions: 3685
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)