Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b22f
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical pr...   106   9e-24
L23647-3|AAK67242.2|  183|Caenorhabditis elegans Hypothetical pr...    42   3e-04
Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.     28   4.9  
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno...    28   4.9  
U70844-7|AAB09097.1|  686|Caenorhabditis elegans Adam (disintegr...    27   6.5  
AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical
           protein T14B4.2 protein.
          Length = 139

 Score =  106 bits (255), Expect = 9e-24
 Identities = 54/135 (40%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
 Frame = +3

Query: 84  ALFKSFFARQMXSTHQAVLSTIRTQSTNLKPDPDAPVEMEN-PFKKELKQXILCKLNIDP 260
           +L +SF   Q   T +   S+  TQ +      D PV +EN P+ KE ++  LC   ++ 
Sbjct: 7   SLVRSFIRPQ---TFRLCSSSSTTQGSPSVSSDDEPVILENNPYTKEPRKSFLCSTGVEL 63

Query: 261 DYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMPYTYKHKIFLKD 440
           DYKN RLL QF S ++GR+Y RHITGLC   + ++ + I K++   +MP   K   + +D
Sbjct: 64  DYKNSRLLQQFVSTFSGRVYDRHITGLCDENKKKLIEAIAKSRRAGFMPIFVKDPKYTRD 123

Query: 441 PKLFDPENPVRSHRF 485
           PKLFDP  P+R H F
Sbjct: 124 PKLFDPLKPIRPHSF 138


>L23647-3|AAK67242.2|  183|Caenorhabditis elegans Hypothetical
           protein ZC262.8 protein.
          Length = 183

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 20/56 (35%), Positives = 33/56 (58%)
 Frame = +3

Query: 219 ELKQXILCKLNIDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKA 386
           EL     C + I   YK+  +L QF     G + PR +TGLCK++Q+++E+ + +A
Sbjct: 66  ELCSLCTCNVPIKLTYKDVLILEQFMRD-DGTVLPRQLTGLCKKQQLRMERCVMQA 120


>Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical
           protein C55A1.5 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 469 TGFSGSNNFGSFKNILCL 416
           T F G  NFGS+KN+L L
Sbjct: 43  TVFGGQKNFGSYKNLLVL 60


>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 93  KSFFARQMXSTHQAVLSTIRTQSTNLKPDPDAPVEMENPFK 215
           +S F        Q VL+  RTQST+  P P AP     P K
Sbjct: 340 ESHFTYAQTQNGQKVLA--RTQSTSTSPPPQAPASAFEPVK 378


>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
           abnormal morphology protein19 protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 93  KSFFARQMXSTHQAVLSTIRTQSTNLKPDPDAPVEMENPFK 215
           +S F        Q VL+  RTQST+  P P AP     P K
Sbjct: 340 ESHFTYAQTQNGQKVLA--RTQSTSTSPPPQAPASAFEPVK 378


>U70844-7|AAB09097.1|  686|Caenorhabditis elegans Adam (disintegrin
           plus metalloprotease)family protein 4 protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 332 NWSM*KKTDASGAGNNQGSGFSL 400
           NW + K+ D SG G  Q  GFS+
Sbjct: 230 NWDVGKEDDISGRGRFQNMGFSI 252


>AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.1 protein.
          Length = 912

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -3

Query: 438 LSKIFYVCKCTAYRLNPEPWLFPAPLASVFFYIDQLYASGRFCPCTEIEIAIIICNSCN 262
           L  + YV   TA+ +    + F    A+V   +D L  +  FC C+ +    I C S N
Sbjct: 625 LELMIYVQSATAFMIAVVNYGFEKFAATVNCSMDLLDLNPTFCDCSVVAHGSISCGSSN 683


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,941,677
Number of Sequences: 27780
Number of extensions: 251154
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)