Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b21r
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    47   8e-07
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    47   8e-07
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    47   8e-07
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    27   0.73 
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   2.2  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   3.0  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   3.0  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   3.9  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    24   6.8  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    23   9.0  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 46.8 bits (106), Expect = 8e-07
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -2

Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
           PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 46.8 bits (106), Expect = 8e-07
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -2

Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
           PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 46.8 bits (106), Expect = 8e-07
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -2

Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
           PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 0.73
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 330 PPLGRFAVRDMRQTVAVGVIK 268
           P LGRF +R    TVA G++K
Sbjct: 569 PALGRFILRRSGDTVAAGIVK 589


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 324 LGRFAVRDMRQTVAVG-VIKAVN 259
           +GRF +RD   TVAVG V+K ++
Sbjct: 640 MGRFTLRDQGTTVAVGKVVKILD 662


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 136 GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 41
           G S E     S+   IFY       FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 203 PLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTA 313
           P  + ++   T+PP  S+  T  + PT ++   + TA
Sbjct: 73  PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 202 QEVARAVNSTIFHTTAILHSPKGVSKEKRATNSFL 98
           + +A A+N +I  TT +    K +  E+ ++ SFL
Sbjct: 369 EALAYAINPSILPTTLLTSYQKSIQDEENSSVSFL 403


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 116 PFFLRNTFR*MKYRSCMKNCAVNSSSYFLPLVAFSA 223
           PF   N  + + YR   +NCA  +SS  L     +A
Sbjct: 184 PFARINLMKGVAYREVTENCAAAASSLVLEFSMLTA 219


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 121 KRATNSFLFYIFYKACNVTLFY 56
           K A++SF   IF K C  TL++
Sbjct: 59  KYASSSFAERIFCKNCGTTLYF 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,077,181
Number of Sequences: 5004
Number of extensions: 17038
Number of successful extensions: 65
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)