Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1b21r
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 47 3e-06
03_01_0547 + 4093196-4093657,4094267-4095148 47 3e-06
03_01_0544 + 4082528-4082989,4083585-4084466 47 3e-06
03_01_0543 + 4076981-4077442,4078145-4079026 47 3e-06
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 1.2
09_04_0400 + 17296414-17296854,17299212-17299403 27 4.7
11_06_0383 + 22965599-22966090 26 6.2
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 26 6.2
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 26 6.2
01_05_0791 + 25267885-25267930,25268258-25268713,25268802-252688... 26 6.2
02_02_0284 - 8547126-8547187,8547306-8547395,8547810-8547861,854... 26 8.3
01_06_1581 + 38428780-38430333 26 8.3
01_02_0102 - 11148219-11148563,11148650-11149534 26 8.3
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 47.2 bits (107), Expect = 3e-06
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = -2
Query: 330 PPLGRFAVRDMRQTVAVGVIKAV 262
PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 47.2 bits (107), Expect = 3e-06
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = -2
Query: 330 PPLGRFAVRDMRQTVAVGVIKAV 262
PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 47.2 bits (107), Expect = 3e-06
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = -2
Query: 330 PPLGRFAVRDMRQTVAVGVIKAV 262
PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 47.2 bits (107), Expect = 3e-06
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = -2
Query: 330 PPLGRFAVRDMRQTVAVGVIKAV 262
PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKNV 429
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 52 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 132
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>09_04_0400 + 17296414-17296854,17299212-17299403
Length = 210
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 185 SSSYFLPLVAFSAALVTLPPPASLKLTALMTP 280
SSS+ P ++FS+ PPP + + A+ P
Sbjct: 16 SSSFMAPRISFSSDFALEPPPPAQQQPAVRAP 47
>11_06_0383 + 22965599-22966090
Length = 163
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 149 KYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTA 268
+++ C +C V S +PLV F A V++P ++L + +
Sbjct: 54 RHKRC--SCVVPSDHSLVPLVVFIAVRVSMPSSSALVIVS 91
>06_03_0912 +
25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 125 LRNTFR*MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTAL 271
L NT R + ++ C K+ S + FL ++ FSA + P + L+ L
Sbjct: 476 LPNTARALHFKDCRKSPKNYSETKFLRILDFSACTINELPDSISHLSLL 524
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 208 QGQEVARAVNSTIFHTTAILHSPKGVSKEKRATNSFLFYIFYKA 77
QGQ V A + H IL + K A NSFL + KA
Sbjct: 34 QGQNVYPADQQMLIHQGKILKDDTTLEGNKVAENSFLVIMLSKA 77
>01_05_0791 +
25267885-25267930,25268258-25268713,25268802-25268832,
25268949-25269255
Length = 279
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 233 TLPPPASLKLTALMTPTAT 289
TLPPP + T MTPT T
Sbjct: 192 TLPPPTPMTPTTPMTPTPT 210
>02_02_0284 -
8547126-8547187,8547306-8547395,8547810-8547861,
8548209-8548284,8550513-8550632,8553334-8553423,
8553842-8554024,8554125-8554185,8554437-8554477,
8554563-8554727,8555699-8555776,8556137-8556282
Length = 387
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 236 LPPPASLKLTALMTPTATVC-LMSRTAKRPRGG 331
LPPP+ L + + TATVC ++ +AKR G
Sbjct: 267 LPPPSMLCCSTASSVTATVCPILVCSAKRIGNG 299
>01_06_1581 + 38428780-38430333
Length = 517
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 164 MKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTAT 289
M+ + + Y LP + SAAL+ PP A+L L A+
Sbjct: 35 MRARGLRADEYTLPPILNSAALLRAPPAAALHALLLRAGLAS 76
>01_02_0102 - 11148219-11148563,11148650-11149534
Length = 409
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 137 FR*MKYR--SCMKNCAVNSSSYFLPLVAFSAALVTLPPP 247
F+ MK R + N V S S+FLP+V F+A PPP
Sbjct: 259 FKVMKERMYKIISNAIVVSYSHFLPVVPFNA--FNPPPP 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,681,412
Number of Sequences: 37544
Number of extensions: 98702
Number of successful extensions: 353
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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