Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b21r
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    46   8e-06
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    46   8e-06
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    46   8e-06
Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical pr...    29   0.79 
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    29   0.79 
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    28   1.8  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    27   3.2  
AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical...    27   4.2  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = -2

Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
           PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 386 PLGRFAVRDMRQTVAVGVIKSV 407


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = -2

Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
           PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSV 441


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = -2

Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
           PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSV 441


>Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical
           protein F57B1.9a protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 146 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 301
           M Y +C    ++N   Y   L   ++A+V LPPP ++ +  ++   A  C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 121 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 14
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 330 PPLGRFAVRDMRQTVAVG-VIKAV 262
           P LGRF +RD  +T+A+G V+K V
Sbjct: 508 PYLGRFTLRDEGKTIAIGKVLKVV 531


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 166 HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNL 50
           H TA L S K V+  K+    F+ +  ++ C+  LF+ L
Sbjct: 107 HITAELSSKKEVTFTKKGKEDFIVHDRHEKCSAILFHAL 145


>AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical
           protein Y47G6A.31 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 61  FYNLYKVIHNISETFCYDC 5
           F +L K++ N   TFCY C
Sbjct: 44  FQHLPKLLENCGHTFCYSC 62


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 158 SCMKNCAVNSSSYFLPLVAFSAALVTLPP 244
           SC     ++SS YF P+V++  A + L P
Sbjct: 346 SCPFGVVLDSSDYFRPVVSYFEAEIALNP 374


>Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK1037.9 protein.
          Length = 344

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 164 MKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMS 304
           +K  A  +S++ + ++AF  ALV +  P S ++  L TP     ++S
Sbjct: 118 VKKTAQRASTWLILMIAFIRALV-IRYPMSSRIEKLTTPKVAFIIIS 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,069,891
Number of Sequences: 27780
Number of extensions: 97716
Number of successful extensions: 248
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)