Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1b21f
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 47 1e-06
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 47 1e-06
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 47 1e-06
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 27 0.98
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 25 3.0
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 3.9
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 3.9
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 5.2
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 24 6.9
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 24 9.1
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 46.8 bits (106), Expect = 1e-06
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +2
Query: 5 PLGRFAVRDMRQTVAVGVIKAV 70
PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 46.8 bits (106), Expect = 1e-06
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +2
Query: 5 PLGRFAVRDMRQTVAVGVIKAV 70
PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 46.8 bits (106), Expect = 1e-06
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +2
Query: 5 PLGRFAVRDMRQTVAVGVIKAV 70
PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 0.98
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 2 PPLGRFAVRDMRQTVAVGVIK 64
P LGRF +R TVA G++K
Sbjct: 569 PALGRFILRRSGDTVAAGIVK 589
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 3.0
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +2
Query: 8 LGRFAVRDMRQTVAVG-VIKAVN 73
+GRF +RD TVAVG V+K ++
Sbjct: 640 MGRFTLRDQGTTVAVGKVVKILD 662
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 3.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 196 GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 291
G S E S+ IFY FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 3.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 129 PLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTA 19
P + ++ T+PP S+ T + PT ++ + TA
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 24.6 bits (51), Expect = 5.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 130 QEVARAVNSTIFHTTAILHSPKGVSKEKRATNSFL 234
+ +A A+N +I TT + K + E+ ++ SFL
Sbjct: 369 EALAYAINPSILPTTLLTSYQKSIQDEENSSVSFL 403
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 6.9
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 343 IYTLVCSHNKMFQIYYV*PY-INYKIMLHYKPCKKYRKGMSL*PFFPSKHLSVNEVSQLY 167
++TL+ SHN + ++Y Y + + +L+ K ++ + + L F S HL ++
Sbjct: 290 LFTLMISHNLDYPLFYPKLYALLDRNLLYLKTRSRFFRLLDL--FLSSTHLPATLIASFI 347
Query: 166 EKL 158
++L
Sbjct: 348 KRL 350
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 216 PFFLRNTFR*MKYRSCMKNCAVNSSSYFLPLVAFSA 109
PF N + + YR +NCA +SS L +A
Sbjct: 184 PFARINLMKGVAYREVTENCAAAASSLVLEFSMLTA 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,258,380
Number of Sequences: 5004
Number of extensions: 20994
Number of successful extensions: 78
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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