Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b08r
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   1.9  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   2.5  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   3.3  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   3.3  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    24   5.8  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    24   5.8  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   7.6  

>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 187 GNNGGKHCSFSPVVLREFNGRKHYIKVDCRRH 92
           G++    C    +V+   NGR+ Y++   RRH
Sbjct: 485 GHHKNPKCRAKKLVVESRNGRREYVQDAVRRH 516


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 214 HDWDQKPSHAKNGSAYDVNY*GSEK 288
           HD  ++PSH K+ SA  ++   S K
Sbjct: 229 HDHGERPSHVKDASAQHIDLLSSTK 253


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 91  DSTNSVRHYISLSKTDNCCSSI 26
           DS+NS  +  S+   DNCC  I
Sbjct: 99  DSSNSHHNNESICNNDNCCREI 120


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 163 SFSPVVLREFNG--RKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSIHSG 17
           S+S V+    N   R++ IKV  +RH        Y+++ K   C  S H G
Sbjct: 109 SYSTVLTATENSTKREYAIKVLDKRHIIKEKKEKYVNIEKEALCILSKHPG 159


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 118 YIKVDCRRHDSTNSVRHYISLSKTDNCCSSIHSGLKCLN 2
           + K+D R  D T+SVR  I++ K  N    ++S L CL+
Sbjct: 777 HTKLDLRLSDVTDSVRSRINVVKFGN----LNSLLSCLH 811


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 275 RAVKNPMILKSQ*LLT 322
           RAVKNPMIL+ +  LT
Sbjct: 12  RAVKNPMILEKERQLT 27


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 154 PVVLREFNGRKHYIKVDCRRHDSTNSVRHYISL 56
           PV+L +    K+  +VD    D   + RH ISL
Sbjct: 541 PVLLHKMKNAKNSPRVDRINEDCILAARHLISL 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,520
Number of Sequences: 5004
Number of extensions: 28483
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)