Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b08f
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity...    29   1.5  
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    27   3.4  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   4.5  
U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1 (de...    27   4.5  
U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1 (de...    27   4.5  
AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical ...    27   6.0  

>Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical
           protein C48D1.3 protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 3   LICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 101
           L+C+VY+ RS     + G+   L++ ++GG  L
Sbjct: 423 LLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455


>AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity
           choline transporterCHO-1 protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 3   LICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 101
           L+C+VY+ RS     + G+   L++ ++GG  L
Sbjct: 423 LLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
            F40E10.4 protein.
          Length = 1410

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +2

Query: 170  GKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSI 319
            G+HC    +   +   R+H+I+ +CR  D               NCC+++
Sbjct: 1322 GEHCDEKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTAV 1371


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
            protein F40E10.4 protein.
          Length = 1410

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +2

Query: 170  GKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSI 319
            G+HC    +   +   R+H+I+ +CR  D               NCC+++
Sbjct: 1322 GEHCDEKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTAV 1371


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 176 HCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSIHS 325
           +CS +P V  E      + K     H S N+  ++     +DNCC+  ++
Sbjct: 770 NCSNNPNVCSENTNLTQFQKYHPNTHVSLNNHSNFAQNCPSDNCCTETNA 819


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 176 HCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSIHS 325
           +CS +P V  E      + K     H S N+  ++     +DNCC+  ++
Sbjct: 770 NCSNNPNVCSENTNLTQFQKYHPNTHVSLNNHSNFAQNCPSDNCCTETNA 819


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -2

Query: 238 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 98
           NF IM P +++  + W+ +     ++   L+ +RG T  + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -2

Query: 238 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 98
           NF IM P +++  + W+ +     ++   L+ +RG T  + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511


>U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform a protein.
          Length = 839

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +2

Query: 113 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 235
           +FDPN+ T   + ++G     +    C F P+ L     RK YI+
Sbjct: 578 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 622


>U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform b protein.
          Length = 842

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +2

Query: 113 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 235
           +FDPN+ T   + ++G     +    C F P+ L     RK YI+
Sbjct: 581 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 625


>AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical
           protein Y37E3.1 protein.
          Length = 402

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 288 CQKQITAARQYILDLKCLKFRNKYDE 365
           C+   T  + YI    CLKF  KYDE
Sbjct: 209 CELSRTDPQVYINMATCLKFMEKYDE 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,287,697
Number of Sequences: 27780
Number of extensions: 186752
Number of successful extensions: 387
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)