Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b06f
         (543 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   3.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   3.0  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   7.0  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.0  

>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 392 SMYRFGDAKPHLSSRQTH 445
           SM  F  A PHLS   TH
Sbjct: 66  SMAEFMTALPHLSGDMTH 83


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 392 SMYRFGDAKPHLSSRQTH 445
           SM  F  A PHLS   TH
Sbjct: 66  SMAEFMTALPHLSGDMTH 83


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 390 LQCTDLGTLSLICPA 434
           +QCT  G  ++ CPA
Sbjct: 63  IQCTSSGLQAIRCPA 77


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 305 NWDTPTSRA 279
           +WDTPTS A
Sbjct: 6   DWDTPTSSA 14


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,780
Number of Sequences: 336
Number of extensions: 2158
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)