Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1b04r
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-12|CAB00066.1| 368|Caenorhabditis elegans Hypothetical p... 30 2.5
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 30 2.5
AL033508-5|CAA22057.1| 368|Caenorhabditis elegans Hypothetical ... 30 2.5
U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 29 3.3
Z68343-1|CAD89741.1| 231|Caenorhabditis elegans Hypothetical pr... 29 4.4
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 29 4.4
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 5.8
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 29 5.8
AC024876-6|AAS80337.1| 181|Caenorhabditis elegans Hypothetical ... 29 5.8
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 28 7.6
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 28 7.6
>Z75714-12|CAB00066.1| 368|Caenorhabditis elegans Hypothetical
protein Y106G6G.1 protein.
Length = 368
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 554 SINRDVQ-PTDFISPVALSASEDLPESGNVCGFGEV 450
++N +V P + I PVA +S LPE+G V G E+
Sbjct: 301 NVNGEVTAPEEKIDPVARDSSHALPENGEVTGNSEI 336
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 798 PGCPRRQ-ALPGPSTHRCFDQWSAQHLRRFPHSLSLGPQRR*LPPRCPFHLGPLW 637
PG P R A GP T+ C D W H + G +R L C + PLW
Sbjct: 1138 PGHPHRFIATQGPLTNTCEDFWMMLMQYDVEHIVMFGQKRENLTDMCTDYF-PLW 1191
>AL033508-5|CAA22057.1| 368|Caenorhabditis elegans Hypothetical
protein Y106G6G.1 protein.
Length = 368
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 554 SINRDVQ-PTDFISPVALSASEDLPESGNVCGFGEV 450
++N +V P + I PVA +S LPE+G V G E+
Sbjct: 301 NVNGEVTAPEEKIDPVARDSSHALPENGEVTGNSEI 336
>U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical
protein K09E2.1 protein.
Length = 915
Score = 29.5 bits (63), Expect = 3.3
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Frame = +1
Query: 394 SAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVS 573
++ ++ TS++L+ + S +TSP F S R + ++ + + T+ T+P
Sbjct: 515 TSSSSSTSQRLTTTTKSSTTSPFATRFVFSTRVTFRPVSSTVVSTKSSTTSSTTTKPTTL 574
Query: 574 EGCRRTALVSVTRDGLITTTR-----P*RTQMKRTSWRQLAALRTQRE*MREPAQVLSRP 738
T + S T + +T+ P RT K T+ A Q R P +L
Sbjct: 575 STTTTTQVPSTTTSVTVPSTQKATPSPSRTTKKSTTTTSTTATPRQATPTRNPLPLLQTM 634
Query: 739 LVETA 753
TA
Sbjct: 635 SAITA 639
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 29.5 bits (63), Expect = 3.3
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +1
Query: 343 TSYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTS-----PKPQTFPDSGRSSLADK 507
+S V + +A+ +A T TSKQ S S +PSTS P T S S A
Sbjct: 2838 SSTANVASMAAMAAAAQAASTPTTSKQASASTSTPSTSAVASAQTPSTSVPSTSSQAAAA 2897
Query: 508 ATGEMKSVGWTSLLMLTRPMVSEGCRRTALVS 603
A S + L+LT M + ++ ++S
Sbjct: 2898 AASSANSGEDINPLLLTALMQNPAILQSMMLS 2929
>Z68343-1|CAD89741.1| 231|Caenorhabditis elegans Hypothetical
protein F59B8.1a protein.
Length = 231
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/87 (26%), Positives = 39/87 (44%)
Frame = +1
Query: 544 LLMLTRPMVSEGCRRTALVSVTRDGLITTTRP*RTQMKRTSWRQLAALRTQRE*MREPAQ 723
L+ +T+ S+G + A +RD LITT ++ RT WR L R + +++ +
Sbjct: 5 LMSMTKEGASDGPQFVAPAKTSRDTLITTA----YRLHRTRWRILEPYRRLKNALKKLQE 60
Query: 724 VLSRPLVETAMRRWTW*GLSPRATRAL 804
+ A+ R+ G S R L
Sbjct: 61 DYLKSKEANALMRYVKLGQSVREVAML 87
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +1
Query: 391 PSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLT 558
P+A + TS Q S S ++SP P P + R + A ++T ++V T+ L LT
Sbjct: 266 PTATSPKTSSQPVSSSTSSTSSPAPTNPPTTSRPTTASQSTAS-QNVETTTKLGLT 320
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.7 bits (61), Expect = 5.8
Identities = 27/94 (28%), Positives = 40/94 (42%)
Frame = +1
Query: 358 VWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGW 537
V P++ ++RP++ T +S S G+ STSP P T S SS T
Sbjct: 334 VIPTTTQTTQRPTS--TGIPSTVSTSQGTSSTSPIPSTTQTS--SSAPSTYTSNFTPSPT 389
Query: 538 TSLLMLTRPMVSEGCRRTALVSVTRDGLITTTRP 639
T+LL T ++G ++ S TT P
Sbjct: 390 TTLLTSTIAPSTQGVPTSSKSSSPNSTPTTTITP 423
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 776 PYQVHLRIAVSTSGLLNTCAGSLIHSRWVLSAASCLQ 666
P+ V +R+ C G+LI + VL+AA C Q
Sbjct: 44 PWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80
>AC024876-6|AAS80337.1| 181|Caenorhabditis elegans Hypothetical
protein Y94H6A.10 protein.
Length = 181
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 436 PGSPSTSPKP-QTFPDSGRSSLADKATGEMKSVGW 537
P S S S P + PDS RS++ K T +M+ GW
Sbjct: 28 PESSSKSKSPLKDGPDSQRSNIRRKLTTQMQKQGW 62
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 510 HGRDEVSGLDIPVDADETNGIRGVQTDCASLRDQ 611
HG D+ +G I ++A+ +NG G+ +D +R Q
Sbjct: 596 HGMDKYTGYQIRIEAEGSNG-SGLSSDTVKVRTQ 628
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 510 HGRDEVSGLDIPVDADETNGIRGVQTDCASLRDQ 611
HG D+ +G I ++A+ +NG G+ +D +R Q
Sbjct: 596 HGMDKYTGYQIRIEAEGSNG-SGLSSDTVKVRTQ 628
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,302,749
Number of Sequences: 27780
Number of extensions: 413844
Number of successful extensions: 1587
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -