Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b03r
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    28   1.4  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   9.7  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 464 FSRMATDPSWLHFYGLFAPPGTRINAVRAT 375
           FS   T+  W HFY LF+   T  +A+ AT
Sbjct: 393 FSSTETNVPWYHFYSLFSLRDTDWSALLAT 422


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 190 CTTCYAYRSHEKTLKIISTHRPQISKS*VNPRPGAFLNSKLTNSKPTP 333
           CT C A  +  ++L   +  + Q  +  ++P P +  +S  T + PTP
Sbjct: 85  CTGCPALNNRIRSL---NASKSQSGRKSLSPNPSSVPSSTETKASPTP 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,265
Number of Sequences: 5004
Number of extensions: 47766
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)