Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b03f
         (701 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0MTA5 Cluster: HMG176; n=1; Helicoverpa armigera|Rep: ...    43   0.008
UniRef50_Q2JCZ2 Cluster: ABC-2; n=3; Frankia|Rep: ABC-2 - Franki...    36   1.3  
UniRef50_UPI0000ECB14E Cluster: UPI0000ECB14E related cluster; n...    34   3.9  

>UniRef50_Q0MTA5 Cluster: HMG176; n=1; Helicoverpa armigera|Rep:
           HMG176 - Helicoverpa armigera (Cotton bollworm)
           (Heliothis armigera)
          Length = 176

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
 Frame = +1

Query: 139 RSNLSVGFIGPQDRLLRSSRFSR--MATDPSWLHFYGLFAPPGTRINAVRATQVGSQSPT 312
           RS +S+G IG  DRLL +S  SR  +A     ++           I AVRA   G Q  T
Sbjct: 73  RSGMSLGNIGASDRLLSASTHSRNPIANQVQTVNVR-YTGSSSIIILAVRAYGSG-QGAT 130

Query: 313 VQIXXXXXXXXXXXXXXXNAPGRGFTYDLEIWGR*VLM 426
            ++               +A GRGF Y +EIWGR V +
Sbjct: 131 ARVVEGYLGRNSITIQLQSARGRGFHYRIEIWGRQVFL 168


>UniRef50_Q2JCZ2 Cluster: ABC-2; n=3; Frankia|Rep: ABC-2 - Frankia
           sp. (strain CcI3)
          Length = 269

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +1

Query: 130 SGSRSNLSVGFIGPQDRLLRSSRFSRMATDPSWLHFYGLFAPPGTRINAVRATQVGSQSP 309
           S + +  S GFI     +  SS F+R+ T P WL  +    P    ++AVRA  +G   P
Sbjct: 179 SSAEAAQSAGFIWIFPLVFASSAFARVETMPGWLQAFARHQPVTVTVDAVRALFLG--GP 236

Query: 310 TVQI 321
            V +
Sbjct: 237 VVSV 240


>UniRef50_UPI0000ECB14E Cluster: UPI0000ECB14E related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECB14E UniRef100 entry -
           Gallus gallus
          Length = 92

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 405 NFQVISESSARCVSELKTHKLEAYAAPGNLDSWR 304
           NF ++S+S++RC+S  K      +  P  LDSWR
Sbjct: 35  NFSLVSQSNSRCLSGWKGGPGAVFGLPAVLDSWR 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,789,755
Number of Sequences: 1657284
Number of extensions: 12635988
Number of successful extensions: 28412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28403
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)