Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b03f
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.79 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.8  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   7.4  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 371 AFLNSKLTNSKPTPPLEIWTVGDCDPTCVARTALIRVPGGAK 246
           +FL+ + +  K     EI  V DCD +   +   +RVP G +
Sbjct: 402 SFLSKRNSEKKCGSLREIKEVSDCDSSESRKEVYVRVPLGQR 443


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 559 VFKLFNNLTF*KIIPKFYFNNVI 491
           V+   NNLT  K++  +Y N V+
Sbjct: 370 VYSFINNLTDRKLLSAWYMNTVL 392


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 559 VFKLFNNLTF*KIIPKFYFNNVI 491
           V+   NNLT  K++  +Y N V+
Sbjct: 262 VYSFINNLTDRKLLSAWYMNTVL 284


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 404 ISKS*VNPRPGAFLNSKLTNSKPTP 330
           +S S  N  PG ++N +     P P
Sbjct: 275 LSNSNTNYNPGTYINKEAGGGSPGP 299


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,126
Number of Sequences: 336
Number of extensions: 3384
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)