Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1b03f
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0076 - 18861629-18861862,18862421-18862532,18863001-18863146     30   2.0  
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389...    28   6.2  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.3  
04_03_0332 + 14535793-14535921,14536003-14537037                       28   8.3  

>11_05_0076 - 18861629-18861862,18862421-18862532,18863001-18863146
          Length = 163

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 186 QQPVLGTNKPDAQIRSATGFNICTTSRHHGYSSEREHNTELHLVN 52
           QQP+L T+  DA    A         R +  S+ ++HN EL L+N
Sbjct: 103 QQPLLTTSGLDAATNCARAVPSFDRDRPNFLSTSKKHNHELQLIN 147


>01_05_0329 -
           21037980-21038378,21038517-21038737,21038827-21038905,
           21039002-21039071,21039144-21039255,21039359-21039398,
           21039482-21039676,21039925-21040044,21040684-21041106,
           21042386-21042928
          Length = 733

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 27/126 (21%), Positives = 53/126 (42%)
 Frame = -3

Query: 414 PSPNFQVISESSARCVSELKTHKLEAYAAPGNLDSWRL*SHLRSPDCVNTGAGGCKETIK 235
           P P++ V+ +   + + E+   K   +A         L +   +PD    G       IK
Sbjct: 374 PLPSYPVLEKLPVKVLPEMNEMKETNHA--------HLQAEFLAPDDCTAGDQNYALPIK 425

Query: 234 VKPRRVGCHTRESRATQQPVLGTNKPDAQIRSATGFNICTTSRHHGYSSEREHNTELHLV 55
           V+        R+  A  Q +  + + +++   +    I  +S+   YSSE++ +T    V
Sbjct: 426 VEVESWVADIRKKEAAMQTITDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQRHT-FQFV 484

Query: 54  NKNWLE 37
           ++N LE
Sbjct: 485 SRNKLE 490


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 449 SHEKTLKIISTHRPQISKS*VNPRPGAFLNSK 354
           SH KTLK+I T   +  +      PGAF NSK
Sbjct: 296 SHSKTLKLICTLNCKSVEEEQAHNPGAFSNSK 327


>04_03_0332 + 14535793-14535921,14536003-14537037
          Length = 387

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 351 HKLEAYAAPGNLDSWRL*S-HLRSPDCVNTGAGGCK 247
           HK+E +A   + + + L   H  + DC+  G GGCK
Sbjct: 286 HKVEVFALDVDTNPYGLTEIHSLNGDCIFVGLGGCK 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,677,290
Number of Sequences: 37544
Number of extensions: 343140
Number of successful extensions: 785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)