Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1b01r
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 37 0.004
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 33 0.065
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.26
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 30 0.35
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 30 0.46
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.61
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.61
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.9
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 2.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ... 27 3.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.2
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 4.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 5.7
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 5.7
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 26 5.7
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 7.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 7.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.5
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 26 7.5
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 7.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 9.9
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.9
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 25 9.9
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 36.7 bits (81), Expect = 0.004
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = +3
Query: 162 TIVTNSGGVQFVGSTVRAGTNSATRLGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSC 341
T TN F TV + T+S++ ++A GV ++ N E T+ + +
Sbjct: 806 TSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSL-NLESTSSVTSTAYTTDS 864
Query: 342 VTVQGLVVTTPPGPSRIQTGNPVGSATSLSSS--VTDNVRAQAEANQVDSTPIAASVVD 512
VT T GPS + + S TSLS+S VT +V + +++ + S D
Sbjct: 865 VT--STTALTSQGPSSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTD 921
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 625 TATLLLWTGVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST*LASAWARTL 446
+AT WT + T+ + + SS A+ WS SS + + +T +++ T
Sbjct: 922 SATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATA 981
Query: 445 SVT 437
SV+
Sbjct: 982 SVS 984
Score = 26.2 bits (55), Expect = 5.7
Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Frame = +3
Query: 144 T*SANETIVTNSGGVQFVGSTVRAGTNSATRLG--VSATVGVKVTMSNAVKNTEKTTVGV 317
T S + +V+ GS+ T+S+T +S+ + ++ S+++ + +
Sbjct: 496 TLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSS 555
Query: 318 DCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIA 497
ISS ++ + T S + + S+TSLS S + + A+ + I+
Sbjct: 556 SITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSIS 615
Query: 498 ASV 506
+S+
Sbjct: 616 SSI 618
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 32.7 bits (71), Expect = 0.065
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +3
Query: 369 TPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSD 548
TP S + + S+T +SSS+T ++ + A ++ S+ ++ + D AK +S
Sbjct: 148 TPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSAD---AKTVSA 204
Query: 549 TGNS-IDG-SVV*TVGKTTPVHNNNVAVGDGQQGGADHGVHSGVSVA 683
+ NS I G S T ++ N++ + G +GV + +SVA
Sbjct: 205 SSNSTISGFSTSTTSASSSAAGNSSSSSYTSYSGAVSNGV-AQLSVA 250
Score = 31.1 bits (67), Expect = 0.20
Identities = 16/80 (20%), Positives = 35/80 (43%)
Frame = +3
Query: 390 IQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDG 569
I + S +S +++ + + + ++ STPI++S+ + +S + S G
Sbjct: 133 IYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSG 192
Query: 570 SVV*TVGKTTPVHNNNVAVG 629
S+ KT +N+ G
Sbjct: 193 SISSADAKTVSASSNSTISG 212
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.26
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Frame = +1
Query: 337 PALRFRAWLLPPHLGPAG---SKPV-TLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPP 504
PA+ R+ P LG A + PV T LPP+ P+LP + P L P LPP
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452
Query: 505 LLMSQTKKLPRNCPTL-GTPLTAVLYRPLARPRQSTTITLQSETASKAGR 651
++ LP P P A P P + + +E + GR
Sbjct: 453 APIA--PPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDGR 500
Score = 29.1 bits (62), Expect = 0.80
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Frame = +1
Query: 367 PPHLGPA-GSKPVTL-----LGLPPACRPALPTTCAPKLKPI----KWTRPQL--PPPLL 510
PP P+ G +P L + PPA PA+P AP L P+ + + P + PP L
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Query: 511 MSQTKKLPRNCPTLGTPLTAVLYRPL 588
S LP + P P+ A PL
Sbjct: 425 PSAPPSLPPSAPP-SLPMGAPAAPPL 449
Score = 26.6 bits (56), Expect = 4.3
Identities = 25/63 (39%), Positives = 29/63 (46%)
Frame = +1
Query: 271 P*AMRSKIPRRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPALPTT 450
P A S P PPS+ + + AP L A + PP PAG LPPA PA P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL--PAGMPAAP--PLPPAA-PAPPPA 479
Query: 451 CAP 459
AP
Sbjct: 480 PAP 482
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 30.3 bits (65), Expect = 0.35
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Frame = +3
Query: 120 VLSLIEVVT*SANETIVTNSGGVQFVGSTVRAGTNSAT-RLGVSATVGVKVTMSNAVKNT 296
V +EVV +A T + G QF +T+ + S + + V G VT S +
Sbjct: 890 VTGTVEVVEPAAGTVTGTLTSGSQFFTTTIAQASGSVSGNVEVIEPSGSTVT-STIYSGS 948
Query: 297 EKTTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSS 437
E T L + S T+ G V P P+ I TG + T SSS
Sbjct: 949 ESFTT---TLAVGSG-TIPGTVEVILPAPTTIYTGTVATTITYSSSS 991
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 29.9 bits (64), Expect = 0.46
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 348 VQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPD-Q 524
V G TTP + + + S SLSS+ TDN+ A V T +AASV D
Sbjct: 146 VYGDSATTPAASEAQASSDILSSLASLSSASTDNLAA-----SVTPTTVAASVASSVDTD 200
Query: 525 KVAKELSDTGNSIDGSV 575
+ +S +S SV
Sbjct: 201 SASATISSVVDSATSSV 217
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.5 bits (63), Expect = 0.61
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 415 LPPACRPALPTTCAPKLKPIKWTRPQLPPP 504
L P+ P LP + +L P+ TRPQ+P P
Sbjct: 1046 LSPSVTPQLPPVSS-RLPPVSATRPQIPQP 1074
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.61
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 334 APALRFRAWLLPPHLGPAGSKPVTLLGLPPACR-PALPTTCAPKLKPIKWTRPQLP-PPL 507
APAL LPP P V L P+ P +P T AP L P + P +P PP+
Sbjct: 450 APALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAP-LPPTTFAPPGVPLPPI 508
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.9
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +3
Query: 201 STVRAGTNSATRLGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSCVTVQGLVVTTPPG 380
ST + S G S+++ +T + +T T++ + SS T + TT
Sbjct: 112 STSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTS 171
Query: 381 PSRIQTGNPVGSATSLSSSVTDNV-RAQAEANQVDSTPIAASVVD 512
+ + P G ++SLS+ +T V + + P + S D
Sbjct: 172 CTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTD 216
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 2.5
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = +3
Query: 414 SATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDGSVV*TVGK 593
S TS+SSS ++N + +VDS P + V D K KE S+ G S T+
Sbjct: 368 STTSISSSPSENSDTSDDLTKVDS-PNKSLVNDNVSAKHDKE-SENGKSKFPPPSQTLVT 425
Query: 594 TTPVH--NNNVAVGDGQQGGADHGVHSGVSVAVPAVDNNKERQVSIVVRVPDR 746
T+ + N + G + +D S SV + + +++ S+ + +R
Sbjct: 426 TSTISAAGNEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRNSVSHEIQNR 478
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 367 PPHLGPAGSKPVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCP 546
PP P+G+ PV + PA + P KP P +PPP S+ +P+ P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV-PPVPPP---SEAPPVPK--P 1203
Query: 547 TLGTP 561
++G P
Sbjct: 1204 SVGVP 1208
>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 201
Score = 27.1 bits (57), Expect = 3.2
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Frame = +3
Query: 69 LPNTALPMIEGTSRALIVLSL----IEVVT*SANETIVTNSGGVQFVGSTVRAGTNSATR 236
LPN LP + R LI LS + N TN+ ++ GS + + N +R
Sbjct: 72 LPNCTLPKPD-VDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIPSFLNRISR 130
Query: 237 LGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSCVTVQGLVVT 368
+G++ + + KNT D SS V + L+V+
Sbjct: 131 IGLAFPTITNALLQHGQKNTSDVD---DSSDSSSDVDEETLIVS 171
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 3.2
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Frame = +3
Query: 153 ANETIVTNSGGVQFVGSTVRAG-TNSATRLGVSATVGVK-VTMSNAVKNTEKTTVGVDCL 326
A+ + ++S ST A T+SAT +S+T T S+ ++ +T
Sbjct: 150 ASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATAT 209
Query: 327 HISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAAS 503
S T T+ S + N SAT+ SSS++ V + +ST A S
Sbjct: 210 SSSLSSTAASNSATSSSLAS--SSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATS 266
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 690 AVDNNKERQVSIVVRVPDRVDIAICNNLMVVLVTSG 797
A+ + E +++VVRV R D + +N + + TSG
Sbjct: 64 ALHDENETNINVVVRVRGRTDQEVRDNSSLAVSTSG 99
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +1
Query: 367 PPHLGPAGSK-PVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPP 501
P P SK P LPP +PA P P + P +PP
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 595 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST 476
VLPT T S VS SSL++F ST G +T
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTT 283
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 806 WLFTRRNQNNHQVITNGNVNS--IRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLA 633
W+FT ++N QV NG + S +N + PL +G S+G+ + + LL
Sbjct: 425 WVFTSDDRNLAQVWVNGRLVSGFEMKANLKNSTPL---TNGVTSSGHQVFKELTQAHLLP 481
Query: 632 VSDC 621
+ C
Sbjct: 482 RTQC 485
>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 220 VPALTVEPTNCTPPLFVTIVSLAD 149
+PAL ++P+ CTP SL D
Sbjct: 74 MPALRLKPSQCTPLFLAVYTSLRD 97
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.5
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +1
Query: 391 SKPVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPTLGTPLTA 570
S PV LL P+LP PK+K + P S + P +G+P TA
Sbjct: 321 SSPVPLLAKKREGSPSLPIPILPKMKDTSIPAAE-PASSTTSARDQTPSTPKDVGSPSTA 379
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 108 WRYLQSWVMPYLVSAETESTDSELAAVGLSKNTIS 4
+RY+ WV ++ E +S D +AAV +S
Sbjct: 2170 YRYVGDWVRHFITLFEDKSQDVVVAAVAAQNTLVS 2204
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 382 PAGSKPVTLLGLPPACRPALPTTCAPKLK-PIKWTRPQLPPP 504
P S P +++ PP+ +P P+ AP P + P PPP
Sbjct: 156 PTVSAPNSMVSPPPSFQP--PSAAAPATSLPSDYNPPPPPPP 195
Score = 25.8 bits (54), Expect = 7.5
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = +1
Query: 424 ACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQ---TKKLP---RNCPTLGTPLTAVLYRP 585
A P +P T PK P PPP L Q T +LP RN LG+ + + P
Sbjct: 218 AVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVN--IPPP 275
Query: 586 LARPRQSTTITLQSETAS 639
A P Q + T S
Sbjct: 276 PATPSQPPRPPTNASTRS 293
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 223 LVPALTVEPTNCTPPLFVTIVSLADYVTTSIRLRTIS 113
L+P++T C PP+FV IV ++ + + L IS
Sbjct: 270 LLPSVTFWQNICYPPIFVKIVDVSLKILFNWDLSNIS 306
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 214 ALTVEPTNCTPPLFVTIVSLADYVTTSI 131
AL+ PTNC ++ VSL Y+T+++
Sbjct: 678 ALSKFPTNCLRSVYSHTVSLMKYLTSAV 705
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 406 LLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPTLGTP 561
+ G P PA + ++P ++ LPPP K LP +L P
Sbjct: 21 IFGAPRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPLPFRSTSLQPP 72
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 749 NSIRNSNYNGNLPLFVIVHGWNSNGN 672
+SIRNS++N L LF V S+GN
Sbjct: 604 SSIRNSDFNSQLYLFETVGVLISSGN 629
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 9.9
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = +1
Query: 415 LPPACRPALPTTCAPKLKPIKWTRPQLPP----PLLMSQTKKLPRNCPTLGTPLTAVLYR 582
LPP PA P + P +PP PL+ + T P + P + P TA +
Sbjct: 210 LPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNV-LPFTAAQHF 268
Query: 583 P 585
P
Sbjct: 269 P 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,743,382
Number of Sequences: 5004
Number of extensions: 85384
Number of successful extensions: 311
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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