Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a24r
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   1.2  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.6  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    25   5.0  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   6.6  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   6.6  
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc...    25   8.7  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    25   8.7  

>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 90  FGKSNANDIYPVVLTSISSFTEWILQN 10
           FG S AN + PV L S  SFT +++++
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 108 AHFGXRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 215
           +H+  +  H S+Y R+R   PG N      QS   H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 96  VSFGKSNANDIYPVVLTSISSFTEWILQN 10
           +SF K    D YP  +  +  FT+ ++QN
Sbjct: 122 ISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 114 NALVGI-VSFGKSNANDIYPVVLTSISSFTEWILQ 13
           NAL  + V FGK+ +ND+    L +  + T+W+L+
Sbjct: 614 NALAPLCVFFGKAKSNDLILSHLITYLNDTDWMLR 648


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 45  W*VLRGRCHWHCS 83
           W V+ GRC W CS
Sbjct: 406 WEVMTGRCVWKCS 418


>SPAC926.05c |||diphthamide biosynthesis protein Dph4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 373 YYPTRCXNTPGYXC*SARMGNXRSRRQCI 287
           YYP RC +  GY      + N RS   C+
Sbjct: 94  YYPCRCGDLGGYVVTEDDLENNRSVVPCM 122


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 432 HPCXNSPQRIRXG*QQXEHKIFHRA 506
           H C  +P+ IR G +Q E  ++H A
Sbjct: 11  HLCMRNPKLIRIGLRQVESIVYHVA 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,617
Number of Sequences: 5004
Number of extensions: 35380
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)