Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a24r
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0085 - 8271718-8272005,8272110-8272393,8273610-8274012,827...    29   2.9  
01_06_0125 + 26711157-26713297,26715026-26715206                       28   3.8  
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354...    28   3.8  
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972...    27   6.6  
02_05_1091 + 34044999-34045082,34046848-34047048,34047312-340475...    27   8.8  

>05_03_0085 -
           8271718-8272005,8272110-8272393,8273610-8274012,
           8274792-8274816,8275686-8276149
          Length = 487

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +2

Query: 131 APKSVLS*SRPPARTKPAQNLLSVTTRS*PLYCSLQFSLLVTMSSSLWRXPXDTLPP*TX 310
           AP S      P  RT P     S T +S   +C  +   L  ++S+ W  P D LPP + 
Sbjct: 81  APPSTDFNEPPSLRTGPGP-FRSTTRQSPRQFCPKENPGLGGIASATWASPVDKLPPQSN 139

Query: 311 VPHPSR 328
           +  P +
Sbjct: 140 LETPHK 145


>01_06_0125 + 26711157-26713297,26715026-26715206
          Length = 773

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 37  TDAGEYYGVDVIGIALSKRYDAY*RILEXGRGTQVSIVVVAATSPDQTGAE 189
           ++ GE  GVD I ++ S   D   + +E GRG    + ++     D  G E
Sbjct: 109 SEEGEVRGVDFIDLSSSSSDDEEEKEVEAGRGAGSRVPIIKEAPDDAEGDE 159


>01_05_0799 + 25334460-25334994,25335060-25335236,25335325-25335447,
            25335559-25335624,25335717-25336685,25336791-25336912,
            25337156-25337549,25337888-25338009,25338253-25338646,
            25338983-25339104,25339348-25339830,25340291-25340960,
            25341713-25342224,25342484-25342540
          Length = 1581

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 58   GVDVIGIALSKRYDAY*RILEXGRGTQVSIVVVAATSPDQTGAEFVISHDAIMTLV--LF 231
            G D+    L +  D Y  +L  G GT+ +IV      PD+    ++ + D++ TL+  +F
Sbjct: 1378 GKDISDYGLPELTDTY-YLLRIGNGTKNTIVDDYVRLPDEIVIGYLDNEDSVNTLIEYVF 1436

Query: 232  PAV 240
            P++
Sbjct: 1437 PSL 1439


>11_04_0454 -
           17895935-17896093,17896878-17896911,17897114-17897252,
           17897487-17897561,17897666-17897945
          Length = 228

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 123 RQGHPSQYCRSRGHQPGPNRR 185
           R+ H  ++ R RG QP PNRR
Sbjct: 28  RRRHHQRHRRRRGGQPAPNRR 48


>02_05_1091 +
           34044999-34045082,34046848-34047048,34047312-34047523,
           34047846-34048413
          Length = 354

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 391 WAEXDGMXYSYDAHILVXILLREFGMANSKXNIRYFTGL 507
           W++  G  Y  DAH+ +  L   FG  +    I  F G+
Sbjct: 58  WSDIGGRDYMEDAHVCISDLANNFGHNSVDDEIISFYGV 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,519,186
Number of Sequences: 37544
Number of extensions: 269746
Number of successful extensions: 622
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)